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PROCEDIA
2010
154views more  PROCEDIA 2010»
13 years 4 months ago
Parallel computation of phylogenetic consensus trees
The field of bioinformatics is witnessing a rapid and overwhelming accumulation of molecular sequence data, predominantly driven by novel wet-lab sequencing techniques. This trend...
Andre J. Aberer, Nicholas D. Pattengale, Alexandro...
TKDE
2010
224views more  TKDE 2010»
13 years 4 months ago
Non-Negative Matrix Factorization for Semisupervised Heterogeneous Data Coclustering
Coclustering heterogeneous data has attracted extensive attention recently due to its high impact on various important applications, such us text mining, image retrieval, and bioin...
Yanhua Chen, Lijun Wang, Ming Dong
BIBM
2010
IEEE
151views Bioinformatics» more  BIBM 2010»
13 years 7 months ago
Probabilistic topic modeling for genomic data interpretation
Recently, the concept of a species containing both core and distributed genes, known as the supra- or pangenome theory, has been introduced. In this paper, we aim to develop a new ...
Xin Chen, Xiaohua Hu, Xiajiong Shen, Gail Rosen
WABI
2010
Springer
128views Bioinformatics» more  WABI 2010»
13 years 8 months ago
Sparsification of RNA Structure Prediction Including Pseudoknots
Background: Although many RNA molecules contain pseudoknots, computational prediction of pseudoknotted RNA structure is still in its infancy due to high running time and space con...
Mathias Möhl, Raheleh Salari, Sebastian Will,...
BIBM
2010
IEEE
157views Bioinformatics» more  BIBM 2010»
13 years 7 months ago
Decomposing PPI networks for complex discovery
Abstract--Protein complexes are important for understanding principles of cellular organization and functions. With the availability of large amounts of high-throughput proteinprot...
Guimei Liu, Chern Han Yong, Limsoon Wong, Hon Nian...