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BIBM
2010
IEEE
158views Bioinformatics» more  BIBM 2010»
13 years 7 months ago
Protein-protein interaction prediction via Collective Matrix Factorization
Abstract--Protein-protein interactions (PPI) play an important role in cellular processes and metabolic processes within a cell. An important task is to determine the existence of ...
Qian Xu, Evan Wei Xiang, Qiang Yang
BIBM
2010
IEEE
144views Bioinformatics» more  BIBM 2010»
13 years 7 months ago
Identification and quantification of abundant species from pyrosequences of 16S rRNA by consensus alignment
16S rRNA gene profiling has recently been boosted by the development of pyrosequencing methods. A common analysis is to group pyrosequences into Operational Taxonomic Units (OTUs),...
Yuzhen Ye
ICDM
2010
IEEE
208views Data Mining» more  ICDM 2010»
13 years 7 months ago
Bonsai: Growing Interesting Small Trees
Graphs are increasingly used to model a variety of loosely structured data such as biological or social networks and entityrelationships. Given this profusion of large-scale graph ...
Stephan Seufert, Srikanta J. Bedathur, Juliá...
CISIS
2010
IEEE
14 years 4 months ago
Scalability Analysis of Progressive Alignment on a Multicore
—Sequence alignment is a fundamental instrument in Bioinformatics. In recent years, numerous proposals have been addressing the problem of accelerating this class of applications...
Sebastian Isaza, Friman Sánchez, Georgi Gay...
EVOW
2010
Springer
14 years 1 months ago
Improving Multi-Relief for Detecting Specificity Residues from Multiple Sequence Alignments
A challenging problem in bioinformatics is the detection of residues that account for protein function specificity, not only in order to gain deeper insight in the nature of functi...
Elena Marchiori