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    BMCBI
    2005
    80views more  BMCBI 2005»
    Sample phenotype clusters in high-density oligonucleotide microarray data sets are revealed using Isomap, a nonlinear algorithm
    13 years 11 months ago
    Sample phenotype clusters in high-density oligonucleotide microarray data sets are revealed using Isomap, a nonlinear algorithm
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    Background: Life processes are determined by the organism's genetic profile and multiple environmental variables. However the interaction between these factors is inherently ...
    Kevin Dawson, Raymond L. Rodriguez, Wasyl Malyj
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    BMCBI
    2005
    99views more  BMCBI 2005»
    Effective ambiguity checking in biosequence analysis
    13 years 11 months ago
    Effective ambiguity checking in biosequence analysis
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    Background: Ambiguity is a problem in biosequence analysis that arises in various analysis tasks solved via dynamic programming, and in particular, in the modeling of families of ...
    Janina Reeder, Peter Steffen, Robert Giegerich
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    BMCBI
    2005
    142views more  BMCBI 2005»
    CLU: A new algorithm for EST clustering
    13 years 11 months ago
    CLU: A new algorithm for EST clustering
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    Background: The continuous flow of EST data remains one of the richest sources for discoveries in modern biology. The first step in EST data mining is usually associated with EST ...
    Andrey A. Ptitsyn, Winston Hide
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    BMCBI
    2005
    120views more  BMCBI 2005»
    pSLIP: SVM based protein subcellular localization prediction using multiple physicochemical properties
    13 years 11 months ago
    pSLIP: SVM based protein subcellular localization prediction using multiple physicochemical properties
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    Background: Protein subcellular localization is an important determinant of protein function and hence, reliable methods for prediction of localization are needed. A number of pre...
    Deepak Sarda, Gek Huey Chua, Kuo-Bin Li, Arun Kris...
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    BMCBI
    2005
    114views more  BMCBI 2005»
    AutoFACT: An Automatic Functional Annotation and Classification Tool
    13 years 11 months ago
    AutoFACT: An Automatic Functional Annotation and Classification Tool
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    Background: Assignment of function to new molecular sequence data is an essential step in genomics projects. The usual process involves similarity searches of a given sequence aga...
    Liisa B. Koski, Michael W. Gray, B. Franz Lang, Ge...
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