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BMCBI
2008
85views more  BMCBI 2008»
13 years 8 months ago
Comprehensive analysis of circadian periodic pattern in plant transcriptome
Background: Circadian rhythm is a crucial factor in orchestration of plant physiology, keeping it in synchrony with the daylight cycle. Previous studies have reported that up to 1...
Andrey A. Ptitsyn
BMCBI
2008
76views more  BMCBI 2008»
13 years 8 months ago
Empirical Bayes analysis of single nucleotide polymorphisms
Background: An important goal of whole-genome studies concerned with single nucleotide polymorphisms (SNPs) is the identification of SNPs associated with a covariate of interest s...
Holger Schwender, Katja Ickstadt
BMCBI
2008
109views more  BMCBI 2008»
13 years 8 months ago
The meaning of alignment: lessons from structural diversity
Background: Protein structural alignment provides a fundamental basis for deriving principles of functional and evolutionary relationships. It is routinely used for structural cla...
Walter Pirovano, K. Anton Feenstra, Jaap Heringa
BMCBI
2008
93views more  BMCBI 2008»
13 years 8 months ago
Hybrid MM/SVM structural sensors for stochastic sequential data
In this paper we present preliminary results stemming from a novel application of Markov Models and Support Vector Machines to splice site classification of Intron-Exon and Exon-I...
Brian Roux, Stephen Winters-Hilt
BMCBI
2008
58views more  BMCBI 2008»
13 years 8 months ago
Discrimination of outer membrane proteins with improved performance
Background: Outer membrane proteins (OMPs) perform diverse functional roles in Gramnegative bacteria. Identification of outer membrane proteins is an important task. Results: This...
Changhui Yan, Jing Hu, Yingfeng Wang