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BMCBI
2008
138views more  BMCBI 2008»
13 years 8 months ago
Novel implementation of conditional co-regulation by graph theory to derive co-expressed genes from microarray data
Background: Most existing transcriptional databases like Comprehensive Systems-Biology Database (CSB.DB) and Arabidopsis Microarray Database and Analysis Toolbox (GENEVESTIGATOR) ...
Arun Rawat, Georg J. Seifert, Youping Deng
BMCBI
2008
121views more  BMCBI 2008»
13 years 8 months ago
A simple and fast heuristic for protein structure comparison
Background: Protein structure comparison is a key problem in bioinformatics. There exist several methods for doing protein comparison, being the solution of the Maximum Contact Ma...
David A. Pelta, Juan Ramón González,...
BMCBI
2008
148views more  BMCBI 2008»
13 years 8 months ago
BATS: a Bayesian user-friendly software for Analyzing Time Series microarray experiments
Summary: BATS is a user-friendly software for Bayesian Analysis of Time Series microarray experiments based on the novel, truly functional and fully Bayesian approach proposed in ...
Claudia Angelini, Luisa Cutillo, Daniela De Candit...
BMCBI
2008
75views more  BMCBI 2008»
13 years 8 months ago
A three-state prediction of single point mutations on protein stability changes
Background: A basic question of protein structural studies is to which extent mutations affect the stability. This question may be addressed starting from sequence and/or from str...
Emidio Capriotti, Piero Fariselli, Ivan Rossi, Rit...
BMCBI
2008
136views more  BMCBI 2008»
13 years 8 months ago
A comparison of machine learning algorithms for chemical toxicity classification using a simulated multi-scale data model
Background: Bioactivity profiling using high-throughput in vitro assays can reduce the cost and time required for toxicological screening of environmental chemicals and can also r...
Richard Judson, Fathi Elloumi, R. Woodrow Setzer, ...