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BMCBI
2008
85views more  BMCBI 2008»
13 years 8 months ago
SPSmart: adapting population based SNP genotype databases for fast and comprehensive web access
Background: In the last five years large online resources of human variability have appeared, notably HapMap, Perlegen and the CEPH foundation. These databases of genotypes with p...
Jorge Amigo, Antonio Salas, Christopher Phillips, ...
BMCBI
2008
100views more  BMCBI 2008»
13 years 8 months ago
Extracting unrecognized gene relationships from the biomedical literature via matrix factorizations
Background: The construction of literature-based networks of gene-gene interactions is one of the most important applications of text mining in bioinformatics. Extracting potentia...
Hyunsoo Kim, Haesun Park, Barry L. Drake
BMCBI
2008
104views more  BMCBI 2008»
13 years 8 months ago
Analyzing the simplicial decomposition of spatial protein structures
Background: The fast growing Protein Data Bank contains the three-dimensional description of more than 45000 protein- and nucleic-acid structures today. The large majority of the ...
Rafael Ördög, Zoltan Szabadka, Vince Gro...
BMCBI
2008
149views more  BMCBI 2008»
13 years 8 months ago
Accelerating the annotation of sparse named entities by dynamic sentence selection
This paper presents an active learning-like framework for reducing the human effort for making named entity annotations in a corpus. In this framework, the annotation work is perf...
Yoshimasa Tsuruoka, Jun-ichi Tsujii, Sophia Anania...
BMCBI
2008
85views more  BMCBI 2008»
13 years 8 months ago
Merging microarray data from separate breast cancer studies provides a robust prognostic test
Background: There is an urgent need for new prognostic markers of breast cancer metastases to ensure that newly diagnosed patients receive appropriate therapy. Recent studies have...
Lei Xu, Aik Choon Tan, Raimond L. Winslow, Donald ...