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NC
2007
123views Neural Networks» more  NC 2007»
13 years 7 months ago
The complexity of latching transitions in large scale cortical networks
Abstract. We study latching dynamics, i.e. the ability of a network to hop spontaneously from one discrete attractor state to another, which has been proposed as a model of an inï¬...
Emilio Kropff, Alessandro Treves
BMCBI
2004
196views more  BMCBI 2004»
13 years 7 months ago
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
Background: In a previous paper, we introduced MUSCLE, a new program for creating multiple alignments of protein sequences, giving a brief summary of the algorithm and showing MUS...
Robert C. Edgar
ISAAC
2007
Springer
183views Algorithms» more  ISAAC 2007»
14 years 1 months ago
The Complexity of Finding Subgraphs Whose Matching Number Equals the Vertex Cover Number
The class of graphs where the size of a minimum vertex cover equals that of a maximum matching is known as K¨onig-Egerv´ary graphs. K¨onig-Egerv´ary graphs have been studied ex...
Sounaka Mishra, Venkatesh Raman, Saket Saurabh, So...
BIBE
2007
IEEE
149views Bioinformatics» more  BIBE 2007»
13 years 11 months ago
XML Encoding of Features Describing Rule-Based Modeling of Reaction Networks with Multi-Component Molecular Complexes
Multi-state molecules and multi-component complexes are commonly involved in cellular signaling. Accounting for molecules that have multiple potential states, such as a protein tha...
Michael L. Blinov, Ion I. Moraru
BMCBI
2006
122views more  BMCBI 2006»
13 years 7 months ago
A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networks
Background:Receptors and scaffold proteins possess a number of distinct domains and bind multiple partners. A common problem in modeling signaling systems arises from a combinator...
Holger Conzelmann, Julio Saez-Rodriguez, Thomas Sa...