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CSB
2004
IEEE
256views Bioinformatics» more  CSB 2004»
14 years 15 days ago
SUPERCONTIGS: A Contig Scaffolding Tool
SUPERCONTIGS is a genome-finishing tool that orders, orients and groups contigs based on clone pair information and an alignment with a related genome. The program can be used in ...
Daniela Puiu
CSB
2004
IEEE
106views Bioinformatics» more  CSB 2004»
14 years 15 days ago
Positive Sample Only Learning (PSOL) for Predicting RNA Genes in E. coli
RNA genes lack most of the signals used for protein gene identification. A major shortcoming of previous discriminative methods to distinguish functional RNA (fRNA) genes from oth...
Richard F. Meraz, Xiaofeng He, Chris H. Q. Ding, S...
CSB
2004
IEEE
124views Bioinformatics» more  CSB 2004»
14 years 15 days ago
Multiple RNA Structure Alignment
RNA structures can be viewed as a kind of special strings with some characters bonded with each other. The question of aligning two RNA structures has been studied for a while, an...
Zhuozhi Wang, Kaizhong Zhang
CSB
2004
IEEE
112views Bioinformatics» more  CSB 2004»
14 years 15 days ago
Inferring Genetic Networks from Microarray Data
In theory, it should be possible to infer realistic genetic networks from time series microarray data. In practice, however, network discovery has proved problematic. The three ma...
Shawn Martin, George Davidson, Elebeoba E. May, Je...
CSB
2004
IEEE
154views Bioinformatics» more  CSB 2004»
14 years 15 days ago
Multi-Knockout Genetic Network Analysis: The Rad6 Example
A novel and rigorous Multi-perturbation Shapley Value Analysis (MSA) method has been recently presented [12]. The method addresses the challenge of defining and calculating the fu...
Alon Kaufman, Martin Kupiec, Eytan Ruppin