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CSB
2004
IEEE
125views Bioinformatics» more  CSB 2004»
14 years 15 days ago
Gene Length and Alternative Transcription in Fruit Fly
Alternative transcription, in which a single gene may give rise to multiple variant mRNA forms, is widely recognized as an important source of protein diversity in complex, eukary...
Boris Budagyan, Ann E. Loraine
CSB
2004
IEEE
14 years 15 days ago
Space-Conserving Optimal DNA-Protein Alignment
DNA-protein alignment algorithms can be used to discover coding sequences in a genomic sequence, if the corresponding protein derivatives are known. They can also be used to ident...
Pang Ko, Mahesh Narayanan, Anantharaman Kalyanaram...
CSB
2004
IEEE
158views Bioinformatics» more  CSB 2004»
14 years 15 days ago
Algorithms for Association Study Design Using a Generalized Model of Haplotype Conservation
There is considerable interest in computational methods to assist in the use of genetic polymorphism data for locating disease-related genes. Haplotypes, contiguous sets of correl...
Russell Schwartz
CSB
2004
IEEE
136views Bioinformatics» more  CSB 2004»
14 years 15 days ago
Minimum Entropy Clustering and Applications to Gene Expression Analysis
Clustering is a common methodology for analyzing the gene expression data. In this paper, we present a new clustering algorithm from an information-theoretic point of view. First,...
Haifeng Li, Keshu Zhang, Tao Jiang
CSB
2004
IEEE
177views Bioinformatics» more  CSB 2004»
14 years 15 days ago
Compressed Pattern Matching in DNA Sequences
We propose derivative Boyer-Moore (d-BM), a new compressed pattern matching algorithm in DNA sequences. This algorithm is based on the BoyerMoore method, which is one of the most ...
Lei Chen, Shiyong Lu, Jeffrey L. Ram