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BMCBI
2006
86views more  BMCBI 2006»
13 years 6 months ago
MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution
Background: Non-coding DNA sequences comprise a very large proportion of the total genomic content of mammals, most other vertebrates, many invertebrates, and most plants. Unravel...
Jun Wang, Peter D. Keightley, Toby Johnson
DNA
2007
Springer
159views Bioinformatics» more  DNA 2007»
14 years 27 days ago
Activatable Tiles: Compact, Robust Programmable Assembly and Other Applications
While algorithmic DNA self-assembly is, in theory, capable of forming complex patterns, its experimental demonstration has been limited by significant assembly errors. In this pa...
Urmi Majumder, Thomas H. LaBean, John H. Reif
IDA
2007
Springer
13 years 6 months ago
An unsupervised clustering approach for leukaemia classification based on DNA micro-arrays data
: DNA micro-arrays provide thousands of genomic expressions on the same subject. A main issue is then to find the subset of genes whose degeneration is responsible of a certain typ...
Simone Garatti, Sergio Bittanti, Diego Liberati, A...
ALIFE
2005
13 years 6 months ago
Evolution of DNA Uptake Signal Sequences
The DNA of some naturally competent species of bacteria contains a large number of evenly distributed copies of a short sequence. This highly overrepresented sequence is believed t...
Dominique Chu, Hoong-Chien Lee, Tom Lenaerts
ICMLA
2007
13 years 8 months ago
Machine learned regression for abductive DNA sequencing
We construct machine learned regressors to predict the behaviour of DNA sequencing data from the fluorescent labelled Sanger method. These predictions are used to assess hypothes...
David Thornley, Maxim Zverev, Stavros Petridis