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RECOMB
2008
Springer
14 years 10 months ago
CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads
A major hindrance to studies of microbial diversity has been that the vast majority of microbes cannot be cultured in the laboratory and thus are not amenable to traditional method...
Sourav Chatterji, Ichitaro Yamazaki, Zhaojun Bai, ...
CEC
2008
IEEE
14 years 4 months ago
A self-adaptive cellular memetic algorithm for the DNA fragment assembly problem
Abstract— The DNA fragment assembly problem is to reconstruct a DNA chain from multiple fragments that have previously been sequenced in a laboratory. This is a critical step in ...
Bernabé Dorronsoro, Enrique Alba, Gabriel L...
ICASSP
2008
IEEE
14 years 4 months ago
Joint base-calling of two DNA sequences with factor graphs
—Automated estimation of DNA base-sequences is an important step in genomics and in many other emerging fields in biological and medical sciences. Current automated sequencers p...
Xiaomeng Shi, Desmond S. Lun, Jim Meldrim, Ralf K&...
ARC
2008
Springer
126views Hardware» more  ARC 2008»
13 years 11 months ago
DNA Physical Mapping on a Reconfigurable Platform
Reconfigurable architectures enable the hardware function to be implemented by the user and, due to its characteristics, have been used in many areas, including Bioinformatics. One...
Adriano Idalgo, Nahri Moreano
SODA
2008
ACM
108views Algorithms» more  SODA 2008»
13 years 11 months ago
Dimension augmentation and combinatorial criteria for efficient error-resistant DNA self-assembly
DNA self-assembly has emerged as a rich and promising primitive for nano-technology. Experimental and analytical evidence indicates that such systems are prone to errors, and acco...
Ho-Lin Chen, Ashish Goel, Chris Luhrs