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ICIP
2008
IEEE
14 years 4 months ago
Microarray image gridding via an evolutionary algorithm
Gridding is the first, essential stage of processing cDNA microarray images. The existing tools for allocating the grid structure in a microarray image often require human interve...
Eleni Zacharia, Dimitris Maroulis
RECOMB
2008
Springer
14 years 10 months ago
A Fast, Alignment-Free, Conservation-Based Method for Transcription Factor Binding Site Discovery
As an increasing number of eukaryotic genomes are being sequenced, comparative studies aimed at detecting regulatory elements in intergenic sequences are becoming more prevalent. M...
Raluca Gordân, Leelavati Narlikar, Alexander...
BIRD
2008
Springer
221views Bioinformatics» more  BIRD 2008»
13 years 11 months ago
Comparison of Exact String Matching Algorithms for Biological Sequences
Exact matching of single patterns in DNA and amino acid sequences is studied. We performed an extensive experimental comparison of algorithms presented in the literature. In additi...
Petri Kalsi, Hannu Peltola, Jorma Tarhio
BMCBI
2008
259views more  BMCBI 2008»
13 years 9 months ago
DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcripti
Background: A typical step in the analysis of gene expression data is the determination of clusters of genes that exhibit similar expression patterns. Researchers are confronted w...
Evert-Jan Blom, Sacha A. F. T. van Hijum, Klaas J....
IMSCCS
2007
IEEE
14 years 4 months ago
Evolutionary Conservation of DNA-Contact residues in DNA-binding Domains
Background: DNA-binding proteins are of utmost importance to gene regulation. The identification of DNA-binding domains is useful for understanding the regulation mechanisms of DN...
Yao-Lin Chang, Huai-Kuang Tsai, Cheng-Yan Kao, Yun...