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ICCS
2009
Springer
14 years 4 months ago
A Massively Parallel Architecture for Bioinformatics
Abstract. Today’s general purpose computers lack in meeting the requirements on computing performance for standard applications in bioinformatics like DNA sequence alignment, err...
Gerd Pfeiffer, Stefan Baumgart, Jan Schröder,...
SP
2009
IEEE
14 years 4 months ago
The Mastermind Attack on Genomic Data
In this paper, we study the degree to which a genomic string, Q, leaks details about itself any time it engages in comparison protocols with a genomic querier, Bob, even if those ...
Michael T. Goodrich
BIBM
2009
IEEE
118views Bioinformatics» more  BIBM 2009»
14 years 1 months ago
Inexact Local Alignment Search over Suffix Arrays
We describe an algorithm for finding approximate seeds for DNA homology searches. In contrast to previous algorithms that use exact or spaced seeds, our approximate seeds may conta...
Mohammadreza Ghodsi, Mihai Pop
GECCO
2009
Springer
173views Optimization» more  GECCO 2009»
14 years 4 months ago
Creating regular expressions as mRNA motifs with GP to predict human exon splitting
Low correlation between mRNA concentrations measured at different locations for the same exon show many current Ensembl exon definitions are incomplete. Automatically created pa...
William B. Langdon, Joanna Rowsell, Andrew P. Harr...
DNA
2009
Springer
145views Bioinformatics» more  DNA 2009»
14 years 4 months ago
Distributed Agreement in Tile Self-assembly
Abstract. Laboratory investigations have shown that a formal theory of fault-tolerance will be essential to harness nanoscale self-assembly as a medium of computation. Several rese...
Aaron Sterling