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AISS
2010
146views more  AISS 2010»
14 years 11 months ago
Zatara, the Plug-in-able Eventually Consistent Distributed Database
With the proliferation of the computer Cloud, new software delivery methods were created. In order to build software to fit into one of these models, a scalable, easy to deploy st...
Bogdan Carstoiu, Dorin Carstoiu
BMCBI
2010
259views more  BMCBI 2010»
14 years 11 months ago
Rule-based spatial modeling with diffusing, geometrically constrained molecules
Background: We suggest a new type of modeling approach for the coarse grained, particle-based spatial simulation of combinatorially complex chemical reaction systems. In our appro...
Gerd Gruenert, Bashar Ibrahim, Thorsten Lenser, Ma...
BMCBI
2010
148views more  BMCBI 2010»
14 years 11 months ago
SKPDB: a structural database of shikimate pathway enzymes
Background: The functional and structural characterisation of enzymes that belong to microbial metabolic pathways is very important for structure-based drug design. The main inter...
Helen A. Arcuri, Geraldo F. D. Zafalon, Evandro A....
BMCBI
2010
131views more  BMCBI 2010»
14 years 11 months ago
Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity
Background: The dynamic motions of many proteins are central to their function. It therefore follows that the dynamic requirements of a protein are evolutionary constrained. In or...
Márton Münz, Rune B. Lyngsø, Jo...
BMCBI
2010
145views more  BMCBI 2010»
14 years 11 months ago
Directionality in protein fold prediction
Background: Ever since the ground-breaking work of Anfinsen et al. in which a denatured protein was found to refold to its native state, it has been frequently stated by the prote...
Jonathan J. Ellis, Fabien P. E. Huard, Charlotte M...
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