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JCC
2007
71views more  JCC 2007»
13 years 10 months ago
A survey of recent developments in ab initio valence bond theory
Abstract: Starting from the 1980s and onwards, Valence Bond theory has been enjoying renaissance that is characterized by the development of a growing number of ab initio methods, ...
Philippe C. Hiberty, Sason Shaik
JCC
2007
115views more  JCC 2007»
13 years 10 months ago
The role of radial nodes of atomic orbitals for chemical bonding and the periodic table
: The role of radial nodes, or of their absence, in valence orbitals for chemical bonding and periodic trends is discussed from a unified viewpoint. In particular, we emphasize th...
Martin Kaupp
JCC
2007
127views more  JCC 2007»
13 years 10 months ago
Prediction of GFP spectral properties using artificial neural network
Abstract: In this study, we applied artificial neural network, implementing the backpropagation algorithm, for the prediction of the excitation and emission maxima of green fluores...
Chanin Nantasenamat, Chartchalerm Isarankura-Na-Ay...
JCC
2008
132views more  JCC 2008»
13 years 10 months ago
The implementation of a fast and accurate QM/MM potential method in Amber
Abstract: Version 9 of the Amber simulation programs includes a new semi-empirical hybrid QM/MM functionality. This includes support for implicit solvent (generalized Born) and for...
Ross C. Walker, Michael F. Crowley, David A. Case
JCC
2008
84views more  JCC 2008»
13 years 10 months ago
Explicit ion, implicit water solvation for molecular dynamics of nucleic acids and highly charged molecules
: An explicit ion, implicit water solvent model for molecular dynamics was developed and tested with DNA and RNA simulations. The implicit water model uses the finite difference Po...
Ninad V. Prabhu, Manoranjan Panda, Qingyi Yang, Ki...