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LION
2009
Springer
115views Optimization» more  LION 2009»
14 years 2 months ago
Flexible Stochastic Local Search for Haplotype Inference
Abstract. Haplotype Inference is a challenging problem in bioinformatics that consists in inferring the basic genetic constitution of diploid organisms on the basis of their genoty...
Luca Di Gaspero, Andrea Roli
LION
2009
Springer
145views Optimization» more  LION 2009»
14 years 2 months ago
A Variable Neighborhood Descent Search Algorithm for Delay-Constrained Least-Cost Multicast Routing
Abstract. The rapid evolution of real-time multimedia applications requires Quality of Service (QoS) based multicast routing in underlying computer networks. The constrained Steine...
Rong Qu, Ying Xu, Graham Kendall
LION
2009
Springer
114views Optimization» more  LION 2009»
14 years 2 months ago
Substitution Matrices and Mutual Information Approaches to Modeling Evolution
Abstract. Substitution matrices are at the heart of Bioinformatics: sequence alignment, database search, phylogenetic inference, protein family classication are based on Blosum, P...
Stephan Kitchovitch, Yuedong Song, Richard C. van ...
IPPS
2009
IEEE
14 years 2 months ago
Minimizing startup costs for performance-critical threading
—Using the well-known ATLAS and LAPACK dense linear algebra libraries, we demonstrate that the parallel management overhead (PMO) can grow with problem size on even statically sc...
Anthony M. Castaldo, R. Clint Whaley