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BIBE
2007
IEEE
128views Bioinformatics» more  BIBE 2007»
15 years 11 months ago
QOMA2: Optimizing the alignment of many sequences
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
Xu Zhang, Tamer Kahveci
BIBE
2007
IEEE
110views Bioinformatics» more  BIBE 2007»
15 years 10 months ago
Discrete Methods for Association Search and Status Prediction in Genotype Case-Control Studies
Abstract—Recent improvements in high-throughput genotyping technology make possible genome-wide association studies and status prediction (classification) for common complex dis...
Dumitru Brinza, Alexander Zelikovsky
BIBM
2007
IEEE
132views Bioinformatics» more  BIBM 2007»
15 years 10 months ago
A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference
In this paper, we present an algorithm to simultaneously align three biological sequences with affine gap model and infer their common ancestral sequence. Our algorithm can be fu...
Feng Yue, Jijun Tang
BROADNETS
2007
IEEE
15 years 10 months ago
DIMPLE: DynamIc Membership ProtocoL for epidemic protocols
—Epidemic protocols assume that information of a random set of nodes is provided at each protocol round. By definition, the random set needs to be chosen uniformly and randomly ...
Jin Sun, Paul J. Weber, Byung Kyu Choi, Roger M. K...
CCGRID
2007
IEEE
15 years 10 months ago
Integrated Data Reorganization and Disk Mapping for Reducing Disk Energy Consumption
Increasing power consumption of high-performance systems leads to reliability, survivability, and cooling related problems. Motivated by this observation, several recent efforts f...
Seung Woo Son, Mahmut T. Kandemir
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