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BMCBI
2010
152views more  BMCBI 2010»
13 years 10 months ago
FITBAR: a web tool for the robust prediction of prokaryotic regulons
Background: The binding of regulatory proteins to their specific DNA targets determines the accurate expression of the neighboring genes. The in silico prediction of new binding s...
Jacques Oberto
CGF
2010
146views more  CGF 2010»
13 years 10 months ago
Pathline: A Tool For Comparative Functional Genomics
Biologists pioneering the new field of comparative functional genomics attempt to infer the mechanisms of gene regulation by looking for similarities and differences of gene activ...
Miriah D. Meyer, Bang Wong, Mark P. Styczynski, Ta...
JOI
2010
130views more  JOI 2010»
13 years 8 months ago
Diffusion of latent semantic analysis as a research tool: A social network analysis approach
Latent Semantic Analysis (LSA) is a relatively new research tool with a wide range of applications in different fields ranging from discourse analysis to cognitive science, from i...
Yasar Tonta, Hamid R. Darvish
BMCBI
2010
172views more  BMCBI 2010»
13 years 10 months ago
Accessing the SEED genome databases via Web services API: tools for programmers
Background: The SEED integrates many publicly available genome sequences into a single resource. The database contains accurate and up-to-date annotations based on the subsystems ...
Terry Disz, Sajia Akhter, Daniel Cuevas, Robert Ol...
BMCBI
2010
112views more  BMCBI 2010»
13 years 10 months ago
TabSQL: a MySQL tool to facilitate mapping user data to public databases
Background: With advances in high-throughput genomics and proteomics, it is challenging for biologists to deal with large data files and to map their data to annotations in public...
Xiaoqin Xia, Michael McClelland, Yipeng Wang