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WABI
2005
Springer
109views Bioinformatics» more  WABI 2005»
14 years 27 days ago
Optimal Protein Threading by Cost-Splitting
Abstract. In this paper, we use integer programming approach for solving a hard combinatorial optimization problem, namely protein threading. For this sequence-to-structure alignme...
Philippe Veber, Nicola Yanev, Rumen Andonov, Vince...
WABI
2010
Springer
160views Bioinformatics» more  WABI 2010»
13 years 5 months ago
Genomic Distance with DCJ and Indels
The double cut and join (DCJ) operation, introduced by Yancopoulos, Attie and Friedberg in 2005, allows one to represent most rearrangement events in genomes. However, a DCJ cannot...
Marília D. V. Braga, Eyla Willing, Jens Sto...
WABI
2005
Springer
107views Bioinformatics» more  WABI 2005»
14 years 27 days ago
Linear Time Algorithm for Parsing RNA Secondary Structure
Abstract Baharak Rastegari and Anne Condon Department of Computer Science, University of British Columbia Abstract. Accurate prediction of pseudoknotted RNA secondary structure is ...
Baharak Rastegari, Anne Condon
WABI
2005
Springer
117views Bioinformatics» more  WABI 2005»
14 years 27 days ago
Faster Algorithms for Optimal Multiple Sequence Alignment Based on Pairwise Comparisons
Multiple Sequence Alignment (MSA) is one of the most fundamental problems in computational molecular biology. The running time of the best known scheme for finding an optimal ali...
Pankaj K. Agarwal, Yonatan Bilu, Rachel Kolodny
WABI
2005
Springer
143views Bioinformatics» more  WABI 2005»
14 years 27 days ago
A Faster Algorithm for Detecting Network Motifs
Motifs in a network are small connected subnetworks that occur in significantly higher frequencies than in random networks. They have recently gathered much attention as a useful ...
Sebastian Wernicke