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BMCBI
2008
91views more  BMCBI 2008»
13 years 10 months ago
PageRank without hyperlinks: Reranking with PubMed related article networks for biomedical text retrieval
Background: Graph analysis algorithms such as PageRank and HITS have been successful in Web environments because they are able to extract important inter-document relationships fr...
Jimmy J. Lin
BMCBI
2010
88views more  BMCBI 2010»
13 years 10 months ago
FastTagger: an efficient algorithm for genome-wide tag SNP selection using multi-marker linkage disequilibrium
Background: Human genome contains millions of common single nucleotide polymorphisms (SNPs) and these SNPs play an important role in understanding the association between genetic ...
Guimei Liu, Yue Wang, Limsoon Wong
BMCBI
2010
117views more  BMCBI 2010»
13 years 10 months ago
New decoding algorithms for Hidden Markov Models using distance measures on labellings
Background: Existing hidden Markov model decoding algorithms do not focus on approximately identifying the sequence feature boundaries. Results: We give a set of algorithms to com...
Daniel G. Brown 0001, Jakub Truszkowski
BMCBI
2010
143views more  BMCBI 2010»
13 years 10 months ago
Evaluation of methods for detection of fluorescence labeled subcellular objects in microscope images
Background: Several algorithms have been proposed for detecting fluorescently labeled subcellular objects in microscope images. Many of these algorithms have been designed for spe...
Pekka Ruusuvuori, Tarmo Äijö, Sharif Cho...
BMCBI
2010
139views more  BMCBI 2010»
13 years 10 months ago
A highly efficient multi-core algorithm for clustering extremely large datasets
Background: In recent years, the demand for computational power in computational biology has increased due to rapidly growing data sets from microarray and other high-throughput t...
Johann M. Kraus, Hans A. Kestler
BMCBI
2010
158views more  BMCBI 2010»
13 years 10 months ago
Validation of differential gene expression algorithms: Application comparing fold-change estimation to hypothesis testing
Background: Sustained research on the problem of determining which genes are differentially expressed on the basis of microarray data has yielded a plethora of statistical algorit...
Corey M. Yanofsky, David R. Bickel
BMCBI
2010
178views more  BMCBI 2010»
13 years 10 months ago
Selecting high-dimensional mixed graphical models using minimal AIC or BIC forests
Background: Chow and Liu showed that the maximum likelihood tree for multivariate discrete distributions may be found using a maximum weight spanning tree algorithm, for example K...
David Edwards, Gabriel C. G. de Abreu, Rodrigo Lab...
BIOINFORMATICS
2007
151views more  BIOINFORMATICS 2007»
13 years 10 months ago
A new protein-protein docking scoring function based on interface residue properties
Motivation: Protein–protein complexes are known to play key roles in many cellular processes. However, they are often not accessible to experimental study because of their low s...
Julie Bernauer, Jérôme Azé, Jo...
AUTOMATICA
2008
107views more  AUTOMATICA 2008»
13 years 10 months ago
New algorithms of the Q-learning type
We propose two algorithms for Q-learning that use the two-timescale stochastic approximation methodology. The first of these updates Q-values of all feasible state
Shalabh Bhatnagar, K. Mohan Babu
AUTOMATICA
2008
115views more  AUTOMATICA 2008»
13 years 10 months ago
Distributed algorithms for reaching consensus on general functions
This paper presents analysis and design results for distributed consensus algorithms in multi-agent networks. We consider continuous consensus functions of the initial state of th...
Jorge Cortés