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SODA
2000
ACM
106views Algorithms» more  SODA 2000»
13 years 11 months ago
Algorithms for optimizing production DNA sequencing
We discuss the problem of optimally "finishing" a partially sequenced, reconstructed DNA segment. At first sight, this appears to be computationally hard. We construct a...
Éva Czabarka, Goran Konjevod, Madhav V. Mar...
SODA
2000
ACM
123views Algorithms» more  SODA 2000»
13 years 11 months ago
Communication complexity of document exchange
We address the problem of minimizing the communication involved in the exchange of similar documents. We consider two users, A and B, who hold documents x and y respectively. Neit...
Graham Cormode, Mike Paterson, Süleyman Cenk ...
SODA
2000
ACM
82views Algorithms» more  SODA 2000»
13 years 11 months ago
On the temporal HZY compression scheme
Z. Cohen, Yossi Matias, S. Muthukrishnan, Sül...
SODA
2000
ACM
111views Algorithms» more  SODA 2000»
13 years 11 months ago
A dynamic programming approach to de novo peptide sequencing via tandem mass spectrometry
Ting Chen, Ming-Yang Kao, Matthew Tepel, John Rush...
SODA
2000
ACM
102views Algorithms» more  SODA 2000»
13 years 11 months ago
Escaping a grid by edge-disjoint paths
We study the edge-disjoint escape problem in grids. Given a set of n sources in a two-dimensional grid, the problem is to connect all sources to the grid boundary using a set of n...
Wun-Tat Chan, Francis Y. L. Chin, Hing-Fung Ting
SODA
2000
ACM
148views Algorithms» more  SODA 2000»
13 years 11 months ago
Computing contour trees in all dimensions
We show that contour trees can be computed in all dimensions by a simple algorithm that merges two trees. Our algorithm extends, simplifies, and improves work of Tarasov and Vyaly...
Hamish Carr, Jack Snoeyink, Ulrike Axen
SODA
2000
ACM
78views Algorithms» more  SODA 2000»
13 years 11 months ago
Strengthening integrality gaps for capacitated network design and covering problems
Robert D. Carr, Lisa Fleischer, Vitus J. Leung, Cy...
SODA
2000
ACM
95views Algorithms» more  SODA 2000»
13 years 11 months ago
On external memory graph traversal
We describe a new external memory data structure, the buffered repository tree, and use it to provide the first non-trivial external memory algorithm for directed breadth-first se...
Adam L. Buchsbaum, Michael H. Goldwasser, Suresh V...
SODA
2000
ACM
58views Algorithms» more  SODA 2000»
13 years 11 months ago
Engineering the compression of massive tables: an experimental approach
Adam L. Buchsbaum, Donald F. Caldwell, Kenneth War...