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IPPS
2010
IEEE
13 years 9 months ago
pFANGS: Parallel high speed sequence mapping for Next Generation 454-roche Sequencing reads
Millions of DNA sequences (reads) are generated by Next Generation Sequencing machines everyday. There is a need for high performance algorithms to map these sequences to the refer...
Sanchit Misra, Ramanathan Narayanan, Wei-keng Liao...
IPPS
2010
IEEE
13 years 9 months ago
On the parallelisation of MCMC-based image processing
Abstract--The increasing availability of multi-core and multiprocessor architectures provides new opportunities for improving the performance of many computer simulations. Markov C...
Jonathan M. R. Byrd, Stephen A. Jarvis, Abhir H. B...
IPPS
2010
IEEE
13 years 9 months ago
Static macro data flow: Compiling global control into local control
Abstract--The expression of parallel codes through abstract, high-level specifications of global control and data flow can greatly simplify the task of creating large parallel prog...
Pritish Jetley, Laxmikant V. Kalé
IPPS
2010
IEEE
13 years 9 months ago
Hardware implementation for scalable lookahead Regular Expression detection
Regular Expressions (RegExes) are widely used in various applications to identify strings of text. Their flexibility, however, increases the complexity of the detection system and ...
Masanori Bando, N. Sertac Artan, Nishit Mehta, Yi ...
IPPS
2010
IEEE
13 years 9 months ago
Evaluating database-oriented replication schemes in Software Transactional Memory systems
Software Transactional Memories (STMs) are emerging as a highly attractive programming model, thanks to their ability to mask concurrency management issues to the overlying applic...
Roberto Palmieri, Francesco Quaglia, Paolo Romano,...
IPPS
2010
IEEE
13 years 9 months ago
A PRAM-NUMA model of computation for addressing low-TLP workloads
It is possible to implement the parallel random access machine (PRAM) on a chip multiprocessor (CMP) efficiently with an emulated shared memory (ESM) architecture to gain easy par...
Martti Forsell