IPPS
2009
IEEE
14 years 6 months ago
2009
IEEE
Computing large multiple protein sequence alignments using progressive alignment tools such as ClustalW requires several hours on state-of-the-art workstations. ClustalW uses a th...
IPPS
2009
IEEE
14 years 6 months ago
2009
IEEE
Through the algorthmic design patterns of data parallelism and task parallelism, the graphics processing unit (GPU) offers the potential to vastly accelerate discovery and innovat...
IPPS
2009
IEEE
14 years 6 months ago
2009
IEEE
HMMer is a widely-used bioinformatics software package that uses profile HMMs (Hidden Markov Models) to model the primary structure consensus of a family of protein or nucleic aci...
IPPS
2009
IEEE
14 years 6 months ago
2009
IEEE
In this paper we describe the parallelization of a dynamic programming algorithm used to find common RNA secondary structures including pseudoknots and similar structures. The se...
IPPS
2009
IEEE
14 years 6 months ago
2009
IEEE
IPPS
2009
IEEE
14 years 6 months ago
2009
IEEE
We consider the operator mapping problem for in-network stream processing, i.e., the application of a tree of operators in steady-state to multiple data objects that are continuou...
IPPS
2009
IEEE
14 years 6 months ago
2009
IEEE
Determining the X-ray crystallographic structures of proteins using the technique of molecular replacement (MR) can be a time and labor-intensive trial-and-error process, involvin...
IPPS
2009
IEEE
14 years 6 months ago
2009
IEEE
Synthetic Floating-Point (SFP), a synthetic benchmark generator program for floating-point circuits is presented. SFP consists of two independent modules for characterisation and...
IPPS
2009
IEEE
14 years 6 months ago
2009
IEEE
4 Automatic differentiation is the primary means of obtaining analytic5 derivatives from a numerical model given as a computer program. There-6 fore, it is an essential productivi...
IPPS
2009
IEEE
14 years 6 months ago
2009
IEEE
Adopting multiple processing units to enhance the computing capability or reduce the power consumption has been widely accepted for designing modern computing systems. Such confi...