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    ALMOB
    2007
    133views more  ALMOB 2007»
    Characteristics of predictor sets found using differential prioritization
    13 years 11 months ago
    Characteristics of predictor sets found using differential prioritization
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    Background: Feature selection plays an undeniably important role in classification problems involving high dimensional datasets such as microarray datasets. For filter-based featu...
    Chia Huey Ooi, Madhu Chetty, Shyh Wei Teng
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    ALMOB
    2007
    170views more  ALMOB 2007»
    A spatio-temporal mining approach towards summarizing and analyzing protein folding trajectories
    13 years 11 months ago
    A spatio-temporal mining approach towards summarizing and analyzing protein folding trajectories
    Download  www.almob.org
    Understanding the protein folding mechanism remains a grand challenge in structural biology. In the past several years, computational theories in molecular dynamics have been empl...
    Hui Yang, Srinivasan Parthasarathy, Duygu Ucar
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    ALMOB
    2007
    71views more  ALMOB 2007»
    RNAstrand: reading direction of structured RNAs in multiple sequence alignments
    13 years 11 months ago
    RNAstrand: reading direction of structured RNAs in multiple sequence alignments
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    Kristin Reiche, Peter F. Stadler
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    ALMOB
    2007
    151views more  ALMOB 2007»
    Local sequence alignments statistics: deviations from Gumbel statistics in the rare-event tail
    13 years 11 months ago
    Local sequence alignments statistics: deviations from Gumbel statistics in the rare-event tail
    Download  www.almob.org
    Background: The optimal score for ungapped local alignments of infinitely long random sequences is known to follow a Gumbel extreme value distribution. Less is known about the imp...
    Stefan Wolfsheimer, Bernd Burghardt, Alexander K. ...
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    ALMOB
    2007
    69views more  ALMOB 2007»
    A basic analysis toolkit for biological sequences
    13 years 11 months ago
    A basic analysis toolkit for biological sequences
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    Raffaele Giancarlo, Alessandro Siragusa, Enrico Si...
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    ALMOB
    2007
    52views more  ALMOB 2007»
    Mapping sequences by parts
    13 years 11 months ago
    Mapping sequences by parts
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    Gilles Didier, Carito Guziolowski
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    ALMOB
    2007
    111views more  ALMOB 2007»
    Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12
    13 years 11 months ago
    Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12
    Download  sysbio.indiana.edu
    Motivation: Transcriptional regulatory network (TRN) discovery from one method (e.g. microarray analysis, gene ontology, phylogenic similarity) does not seem feasible due to lack ...
    Jingjun Sun, Kagan Tuncay, Alaa Abi Haidar, Lisa E...
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    ALMOB
    2007
    129views more  ALMOB 2007»
    Consistency of the Neighbor-Net Algorithm
    13 years 11 months ago
    Consistency of the Neighbor-Net Algorithm
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    Background: Neighbor-Net is a novel method for phylogenetic analysis that is currently being widely used in areas such as virology, bacteriology, and plant evolution. Given an inp...
    David Bryant, Vincent Moulton, Andreas Spillner
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    ALMOB
    2007
    155views more  ALMOB 2007»
    Finding coevolving amino acid residues using row and column weighting of mutual information and multi-dimensional amino acid rep
    13 years 11 months ago
    Finding coevolving amino acid residues using row and column weighting of mutual information and multi-dimensional amino acid rep
    Download  www.almob.org
    Background: Some amino acid residues functionally interact with each other. This interaction will result in an evolutionary co-variation between these residues – coevolution. Ou...
    Rodrigo Gouveia-Oliveira, Anders Gorm Pedersen
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    ALMOB
    2007
    73views more  ALMOB 2007»
    GOGOT: a method for the identification of differentially expressed fragments from cDNA-AFLP data
    13 years 11 months ago
    GOGOT: a method for the identification of differentially expressed fragments from cDNA-AFLP data
    Download  www.almob.org
    Background: One-dimensional (1-D) electrophoretic data obtained using the cDNA-AFLP method have attracted great interest for the identification of differentially expressed transcr...
    Koji Kadota, Ryoko Araki, Yuji Nakai, Masumi Abe
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