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CSB
2003
IEEE
108views Bioinformatics» more  CSB 2003»
14 years 4 months ago
A Pattern Matching Algorithm for Codon Optimization and CpG Motif-Engineering in DNA Expression Vectors
Codon optimization enhances the efficiency of DNA expression vectors used in DNA vaccination and gene therapy by increasing protein expression. Additionally, certain nucleotide mo...
Ravi Vijaya Satya, Amar Mukherjee, Udaykumar Ranga
PAKDD
2004
ACM
94views Data Mining» more  PAKDD 2004»
14 years 4 months ago
Clustering Multi-represented Objects with Noise
Abstract. Traditional clustering algorithms are based on one representation space, usually a vector space. However, in a variety of modern applications, multiple representations ex...
Karin Kailing, Hans-Peter Kriegel, Alexey Pryakhin...
LPAR
2005
Springer
14 years 5 months ago
A New Constraint Solver for 3D Lattices and Its Application to the Protein Folding Problem
Abstract. The paper describes the formalization and implementation of an efficient constraint programming framework operating on 3D crystal lattices. The framework is motivated an...
Alessandro Dal Palù, Agostino Dovier, Enric...
ECAL
2007
Springer
14 years 5 months ago
Folding Protein-Like Structures with Open L-Systems
Abstract. Proteins, under native conditions, fold to specific 3D structures according to their 1D amino acid sequence, which in turn is defined by the genetic code. The specific...
Gemma B. Danks, Susan Stepney, Leo S. D. Caves
BIBM
2007
IEEE
14 years 5 months ago
A Geometric Representation of Protein Sequences
The amino acid sequence of a protein is the key to understanding its structure and ultimately its function in the cell. This paper addresses the fundamental issue of encoding amin...
Shengyin Gu, Olivier Poch, Bernd Hamann, Patrice K...