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BIBE
2007
IEEE
134views Bioinformatics» more  BIBE 2007»
14 years 1 months ago
Bottom-Up Multiple Row Addition Algorithms for the Biclustering-Problem
Abstract—The discovery of locally and significantly correlated subpatterns within a two-dimensional dataset has recently become quite popular and is amongst others addressed by ...
Hyung-Won Koh, Lars Hildebrand
BIBE
2007
IEEE
110views Bioinformatics» more  BIBE 2007»
14 years 1 months ago
Discrete Methods for Association Search and Status Prediction in Genotype Case-Control Studies
Abstract—Recent improvements in high-throughput genotyping technology make possible genome-wide association studies and status prediction (classification) for common complex dis...
Dumitru Brinza, Alexander Zelikovsky
BIBE
2007
IEEE
154views Bioinformatics» more  BIBE 2007»
14 years 1 months ago
A Compartmentalized Approach to the Assembly of Physical Maps
We propose a novel compartmentalized method for the assembly of physical maps from fingerprinted clones. Our assembler exploits the presence of genetic markers at the global leve...
Serdar Bozdag, Timothy J. Close, Stefano Lonardi
BIBE
2007
IEEE
115views Bioinformatics» more  BIBE 2007»
14 years 1 months ago
Semiparametric RMA Background-Correction for Oligonucleotide Arrays
—Microarray technology has provided an opportunity to simultaneously monitor the expression levels of a large number of genes in response to intentional perturbations. A necessar...
Ionut Bebu, Françoise Seillier-Moiseiwitsch...
BIBE
2007
IEEE
168views Bioinformatics» more  BIBE 2007»
14 years 1 months ago
Tissue Identification in Ultrasound Images using Rayleigh Local Parameter Estimation
A method to identify different tissues in ultrasound images is presented. Assuming a Rayleigh modelfor speckle, the different tissues present in the image will be related to the R...
Santiago Aja-Fernández, Marcos Martí...
BIBE
2007
IEEE
113views Bioinformatics» more  BIBE 2007»
14 years 1 months ago
Quantitative and Probabilistic Modeling in Pathway Logic
—This paper presents a study of possible extensions of Pathway Logic to represent and reason about semiquantitative and probabilistic aspects of biological processes. The underly...
Alessandro Abate, Yu Bai, Nathalie Sznajder, Carol...
BIBE
2007
IEEE
191views Bioinformatics» more  BIBE 2007»
14 years 1 months ago
PANP - a New Method of Gene Detection on Oligonucleotide Expression Arrays
Abstract. Currently, the method most used for gene detection calls on Affymetrix oligonucleotide arrays is provided as part of the MAS5.0 software. The MAS method uses Wilcoxon sta...
Peter Warren, Deanne Taylor, Paolo G. V. Martini, ...
BIBE
2007
IEEE
108views Bioinformatics» more  BIBE 2007»
14 years 1 months ago
On the Design of Oligos for Gene Synthesis
— Methods for reliable synthesis of long genes offer great promise for protein synthesis via expression of synthetic genes, with applications to improved analysis of protein stru...
Chris Thachuk, Anne Condon
BIBE
2007
IEEE
214views Bioinformatics» more  BIBE 2007»
14 years 1 months ago
Histogram Transformation for Inter-Modality Image Registration
Abstract—This paper describes an efficient image transformation method based on histogram information and some prior knowledge of tissue expression in different modalities for r...
Joerg Meyer
BIBE
2007
IEEE
127views Bioinformatics» more  BIBE 2007»
14 years 1 months ago
A Heuristic for Phylogenetic Reconstruction Using Transposition
Abstract—Because of the advent of high-throughput sequencing and the consequent reduction in cost of sequencing, many organisms have been completely sequenced and most of their g...
Feng Yue, Meng Zhang, Jijun Tang