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BIBM
2007
IEEE
144views Bioinformatics» more  BIBM 2007»
14 years 6 months ago
Kinetic Modeling Using BioPAX Ontology
Thousands of biochemical interactions are available for download from curated databases such as Reactome, Pathway Interaction Database and other sources in the Biological Pathways...
Oliver Ruebenacker, Ion I. Moraru, James C. Schaff...
BIBM
2007
IEEE
162views Bioinformatics» more  BIBM 2007»
14 years 6 months ago
Multiple Interacting Subcellular Structure Tracking by Sequential Monte Carlo Method
With the wide application of green fluorescent protein (GFP) in the study of live cells, there is a surging need for the computer-aided analysis on the huge amount of image seque...
Quan Wen, Jean Gao, Kate Luby-Phelps
BIBM
2007
IEEE
126views Bioinformatics» more  BIBM 2007»
14 years 6 months ago
Microarray Image Denoising Using a Two-Stage Multiresolution Technique
DNA microarrays have demonstrated an excellent potential in correlating specific gene expression profiles to specific conditions. However, they are affected by inherent noise. ...
Hara Stefanou, Thanasis Margaritis, Dimitris Kafet...
BIBM
2007
IEEE
171views Bioinformatics» more  BIBM 2007»
14 years 6 months ago
GenMiner: Mining Informative Association Rules from Genomic Data
GENMINER is a smart adaptation of closed itemsets based association rules extraction to genomic data. It takes advantage of the novel NORDI discretization method and of the CLOSE ...
Ricardo Martínez, Claude Pasquier, Nicolas ...
BIBM
2007
IEEE
132views Bioinformatics» more  BIBM 2007»
14 years 6 months ago
A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference
In this paper, we present an algorithm to simultaneously align three biological sequences with affine gap model and infer their common ancestral sequence. Our algorithm can be fu...
Feng Yue, Jijun Tang
BIBM
2007
IEEE
14 years 6 months ago
A Geometric Representation of Protein Sequences
The amino acid sequence of a protein is the key to understanding its structure and ultimately its function in the cell. This paper addresses the fundamental issue of encoding amin...
Shengyin Gu, Olivier Poch, Bernd Hamann, Patrice K...
BIBM
2007
IEEE
159views Bioinformatics» more  BIBM 2007»
14 years 6 months ago
Predicting Future High-Cost Patients: A Real-World Risk Modeling Application
Health care data from patients in the Arizona Health Care Cost Containment System, Arizona’s Medicaid program, provides a unique opportunity to exploit state-of-the-art data pro...
Sai T. Moturu, William G. Johnson, Huan Liu
BIBM
2007
IEEE
130views Bioinformatics» more  BIBM 2007»
14 years 6 months ago
Analysis of Protein Protein Dimeric Interfaces
We analyzed the structural properties and the local surface environment of surface amino acid residues of proteins using a large, non-redundant dataset of 2383 protein chains in d...
Feihong Wu, Fadi Towfic, Drena Dobbs, Vasant Honav...