BIRD
2008
Springer
2008
Springer
Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics
13 years 9 months ago
The thermodynamics of RNA-RNA interaction consists of two components: the energy necessary to make a potential binding region accessible, i.e., unpaired, and the energy gained from...
BIRD
2008
Springer
13 years 9 months ago
2008
Springer
The swap matching problem consists if finding a pattern in a text, while allowing for transpositions in the pattern. A new approach using a graph-theoretic model was presented in [...
BIRD
2008
Springer
13 years 9 months ago
2008
Springer
Abstract. Protein-Protein Interaction (PPI) networks contain valuable information for the isolation of groups of proteins that participate in the same biological function. Many pro...
BIRD
2008
Springer
13 years 9 months ago
2008
Springer
Abstract. Gaussian graphical models are widely used to tackle the important and challenging problem of inferring genetic regulatory networks from expression data. These models have...
BIRD
2008
Springer
13 years 9 months ago
2008
Springer
We introduce a new type of workflow design system called e-BioFlow and illustrate it by means of a simple sequence alignment workflow. E-BioFlow, intended to model advanced scienti...
BIRD
2008
Springer
13 years 9 months ago
2008
Springer
Finding motifs in biological sequences is one of the most intriguing problems for string algorithms designers due to, on the one hand, the numerous applications of this problem in...
BIRD
2008
Springer
13 years 9 months ago
2008
Springer
Our group has previously used machine learning techniques to develop computational systems to automatically analyse fluorescence microscope images and classify the location of the ...
BIRD
2008
Springer
13 years 9 months ago
2008
Springer
Abstract. We apply the concept of subset seeds proposed in [1] to similarity search in protein sequences. The main question studied is the design of efficient seed alphabets to con...
BIRD
2008
Springer
13 years 9 months ago
2008
Springer
We study the problem of structured motif search in DNA sequences. This is a fundamental task in bioinformatics which contributes to better understanding of genome characteristics a...
BIRD
2008
Springer
13 years 9 months ago
2008
Springer
The Edinburgh Mouse Atlas aims to capture in-situ gene expression patterns in a common spatial framework. In this study, we construct a grammar to define spatial regions by combina...