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    BCB
    2010
    156views Bioinformatics» more  BCB 2010»
    Accelerating HMMER on GPUs by implementing hybrid data and task parallelism
    13 years 6 months ago
    Accelerating HMMER on GPUs by implementing hybrid data and task parallelism
    Download  gcl.cis.udel.edu
    Many biologically motivated problems are expressed as dynamic programming recurrences and are difficult to parallelize due to the intrinsic data dependencies in their algorithms. ...
    Narayan Ganesan, Roger D. Chamberlain, Jeremy Buhl...
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    BCB
    2010
    126views Bioinformatics» more  BCB 2010»
    Functional similarities of reaction sets in metabolic pathways
    13 years 6 months ago
    Functional similarities of reaction sets in metabolic pathways
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    Analyzing metabolic pathways by means of their steady states has proven to be accurate and efficient for practical purposes. The models such as elementary flux modes (EFMs) and ex...
    Ferhat Ay, Tamer Kahveci
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    BCB
    2010
    138views Bioinformatics» more  BCB 2010»
    Automatic selection of near-native protein-ligand conformations using a hierarchical clustering and volunteer computing
    13 years 6 months ago
    Automatic selection of near-native protein-ligand conformations using a hierarchical clustering and volunteer computing
    Download  gcl.cis.udel.edu
    Trilce Estrada, Roger Armen, Michela Taufer
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    BCB
    2010
    94views Bioinformatics» more  BCB 2010»
    Relational operators for prioritizing candidate biomarkers in high-throughput differential expression data
    13 years 6 months ago
    Relational operators for prioritizing candidate biomarkers in high-throughput differential expression data
    Download  www-users.cs.umn.edu
    Getiria Onsongo, Hongwei Xie, Timothy J. Griffin, ...
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    BCB
    2010
    125views Bioinformatics» more  BCB 2010»
    Protein structure alignment using elastic shape analysis
    13 years 6 months ago
    Protein structure alignment using elastic shape analysis
    Download  www.stat.fsu.edu
    In this paper we present a method for flexible protein structure alignment based on elastic shape analysis of backbones, in a manner that can incorporate different characteristics...
    Wei Liu, Anuj Srivastava, Jinfeng Zhang
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    BIOINFORMATICS
    2010
    90views more  BIOINFORMATICS 2010»
    Identifying biologically relevant differences between metagenomic communities
    13 years 8 months ago
    Identifying biologically relevant differences between metagenomic communities
    Download  mendel.informatics.indiana.edu
    Donovan H. Parks, Robert G. Beiko
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    BIOCOMP
    2010
    170views Bioinformatics» more  BIOCOMP 2010»
    Using the Genetic Code Wisdom for Recognizing Protein Coding Sequences
    13 years 8 months ago
    Using the Genetic Code Wisdom for Recognizing Protein Coding Sequences
    Download  www.smorfland.uni.wroc.pl
    We have elaborated a new method of recognizing protein coding sequences in genomic sequences. The method is exploiting a specific way of genetic code degeneration and relations bet...
    Pawel Blazej, Pawel Mackiewicz, Stanislaw Cebrat
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    BIOCOMP
    2010
    226views Bioinformatics» more  BIOCOMP 2010»
    A Network-based Approach to Classify Disease Stages of Prostate Cancer Using Quantitative Network Measures
    13 years 8 months ago
    A Network-based Approach to Classify Disease Stages of Prostate Cancer Using Quantitative Network Measures
    Download  www.mendeley.com
    Abstract-- This study deals with investigating the classification performance of information-theoretic measures when applied to complex biological networks. In particular, our aim ...
    Laurin A. J. Mueller, Karl G. Kugler, Andreas Dand...
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    BIBE
    2010
    IEEE
    194views Bioinformatics» more  BIBE 2010»
    Improved Immune Genetic Algorithm for Clustering Protein-Protein Interaction Network
    13 years 8 months ago
    Improved Immune Genetic Algorithm for Clustering Protein-Protein Interaction Network
    Download  www.mendeley.com
    Hamid Ravaee, Ali Masoudi-Nejad, Saeed Omidi, Ali ...
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    BIOINFORMATICS
    2010
    100views more  BIOINFORMATICS 2010»
    iMAT: an integrative metabolic analysis tool
    13 years 9 months ago
    iMAT: an integrative metabolic analysis tool
    Download  www.cs.tau.ac.il
    Hadas Zur, Eytan Ruppin, Tomer Shlomi
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