Sciweavers

BMCBI
2008
121views more  BMCBI 2008»
13 years 11 months ago
Microarray data mining using landmark gene-guided clustering
Background: Clustering is a popular data exploration technique widely used in microarray data analysis. Most conventional clustering algorithms, however, generate only one set of ...
Pankaj Chopra, Jaewoo Kang, Jiong Yang, HyungJun C...
BMCBI
2010
149views more  BMCBI 2010»
13 years 11 months ago
KID - an algorithm for fast and efficient text mining used to automatically generate a database containing kinetic information o
Background: The amount of available biological information is rapidly increasing and the focus of biological research has moved from single components to networks and even larger ...
Stephanie Heinen, Bernhard Thielen, Dietmar Schomb...
BMCBI
2010
132views more  BMCBI 2010»
13 years 11 months ago
Consistency, comprehensiveness, and compatibility of pathway databases
Background: It is necessary to analyze microarray experiments together with biological information to make better biological inferences. We investigate the adequacy of current bio...
Donny Soh, Difeng Dong, Yike Guo, Limsoon Wong
BMCBI
2010
129views more  BMCBI 2010»
13 years 11 months ago
LAITOR - Literature Assistant for Identification of Terms co-Occurrences and Relationships
Background: Biological knowledge is represented in scientific literature that often describes the function of genes/ proteins (bioentities) in terms of their interactions (biointe...
Adriano Barbosa-Silva, Theodoros G. Soldatos, Ivan...
BMCBI
2010
137views more  BMCBI 2010»
13 years 11 months ago
Biana: a software framework for compiling biological interactions and analyzing networks
Background: The analysis and usage of biological data is hindered by the spread of information across multiple repositories and the difficulties posed by different nomenclature sy...
Javier Garcia-Garcia, Emre Guney, Ramon Aragues, J...
BMCBI
2010
110views more  BMCBI 2010»
13 years 11 months ago
Discovering local patterns of co - evolution: computational aspects and biological examples
Background: Co-evolution is the process in which two (or more) sets of orthologs exhibit a similar or correlative pattern of evolution. Co-evolution is a powerful way to learn abo...
Tamir Tuller, Yifat Felder, Martin Kupiec
BIODATAMINING
2008
119views more  BIODATAMINING 2008»
13 years 11 months ago
A survey of visualization tools for biological network analysis
The analysis and interpretation of relationships between biological molecules, networks and concepts is becoming a major bottleneck in systems biology. Very often the pure amount ...
Georgios A. Pavlopoulos, Anna-Lynn Wegener, Reinha...
AMAI
2007
Springer
13 years 11 months ago
Reasoning about non-immediate triggers in biological networks
Modeling molecular interactions in biological networks is important from various perspectives such as predicting side effects of drugs, explaining unusual cellular behavior and dr...
Nam Tran, Chitta Baral
CSWWS
2006
14 years 3 months ago
A Distributed Agent System upon Semantic Web Technologies to Provide Biological Data
Bioinformaticians are accustomed to going through analysis steps, in which they employ several data sources, like protein sequence and protein interaction databases, to carry out t...
Farzad Kohantorabi, Gregory Butler, Christopher J....
GCB
2009
Springer
193views Biometrics» more  GCB 2009»
14 years 3 months ago
Integration and Visualisation of Multimodal Biological Data
: Understanding complex biological systems requires data from manifold biological levels. Often this data is analysed in some meaningful context, for example, by integrating it int...
Hendrik Rohn, Christian Klukas, Falk Schreiber