JCB
2007
13 years 11 months ago
2007
Locality is an important and well-studied notion in comparative analysis of biological sequences. Similarly, taking into account affine gap penalties when calculating biological ...
JSC
2006
13 years 11 months ago
2006
Changing base composition during the evolution of biological sequences can mislead some of the phylogenetic inference techniques in current use. However, detecting whether such a ...
IJBRA
2006
13 years 11 months ago
2006
: Probabilistic models for biological sequences (DNA and proteins) are frequently used in bioinformatics. We describe statistical tests designed to detect the order of dependency a...
BIBM
2009
IEEE
14 years 2 months ago
2009
IEEE
—We consider the problem of identifying motifs, recurring or conserved patterns, in the sets of biological sequences. To solve this task, we present new deterministic and exact a...
SC
2005
ACM
14 years 5 months ago
2005
ACM
The proliferation of biological sequence data has motivated the need for an extremely fast probabilistic sequence search. One method for performing this search involves evaluating...
BIBM
2008
IEEE
14 years 6 months ago
2008
IEEE
Identifying functionally important sites from biological sequences, formulated as a biological sequence labeling problem, has broad applications ranging from rational drug design ...