Modeling molecular interactions in biological networks is important from various perspectives such as predicting side effects of drugs, explaining unusual cellular behavior and dr...
A novel and rigorous Multi-perturbation Shapley Value Analysis (MSA) method has been recently presented [12]. The method addresses the challenge of defining and calculating the fu...
Diversity is an important source of robustness in biological systems. Computers, by contrast, are notable for their lack of diversity. Although homogeneous systems have many advan...
Abstract. Self-replication is a fundamental property of many interesting physical, formal and biological systems, such as crystals, waves, automata, and especially forms of natural...
Biological systems can be modeled beneficially as reactive systems, using languages and tools developed for the construction of man-made systems. Our long-term aim is to model a f...
Abstract. Programming language technology can contribute to the development and understanding of Systems Biology by providing formal calculi for specifying and analysing the dynami...
Hanne Riis Nielson, Flemming Nielson, Henrik Pileg...
Biological systems have recently been shown to share many of the properties of reactive systems. This observation has led to the idea of using methods devised for the construction ...
Jasmin Fisher, David Harel, E. Jane Albert Hubbard...
We address the problem of linking observations from reality to a semantic web based knowledge base. Concepts in the biological domain are increasingly being formalized through ont...
Biological systems consist of many components and interactions between them. In Systems Biology the principal problem is modeling complex biological systems and reconstructing inte...
Marenglen Biba, Stefano Ferilli, Nicola Di Mauro, ...
This position paper argues that the operational modelling approaches from the formal methods community can be applied fruitfully within the systems biology domain. The results can ...
Nicola Bonzanni, K. Anton Feenstra, Wan Fokkink, E...