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    TCBB
    2010
    114views more  TCBB 2010»
    Cache-Oblivious Dynamic Programming for Bioinformatics
    13 years 11 months ago
    Cache-Oblivious Dynamic Programming for Bioinformatics
    Download  www.cs.utexas.edu
    — We present efficient cache-oblivious algorithms for some well-studied string problems in bioinformatics including the longest common subsequence, global pairwise sequence alig...
    Rezaul Alam Chowdhury, Hai-son Le, Vijaya Ramachan...
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    IPPS
    2006
    IEEE
    106views Distributed And Parallel Com...» more  IPPS 2006»
    Cache-oblivious simulation of parallel programs
    14 years 6 months ago
    Cache-oblivious simulation of parallel programs
    Download  www.dei.unipd.it
    This paper explores the relation between the structured parallelism exposed by the Decomposable BSP (DBSP) model through submachine locality and locality of reference in multi-lev...
    Andrea Pietracaprina, Geppino Pucci, Francesco Sil...
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