CMSB 2007 | Sciweavers

22

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CMSB
2007
Springer

84views Applied Computing» more CMSB 2007»

A Formal and Integrated Framework to Simulate Evolution of Biological Pathways

13 years 11 months ago

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Lorenzo Dematté, Corrado Priami, Alessandro...

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20

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CMSB
2007
Springer

77views Applied Computing» more CMSB 2007»

Efficient, Correct Simulation of Biological Processes in the Stochastic Pi-calculus

13 years 11 months ago

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This paper presents a simulation algorithm for the stochastic -calculus, designed for the efficient simulation of biological systems with large numbers of molecules. The cost of a ...

Andrew Phillips, Luca Cardelli

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19

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CMSB
2007
Springer

97views Applied Computing» more CMSB 2007»

Chemical Master Equation and Langevin Regimes for a Gene Transcription Model

14 years 1 months ago

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Raya Khanin, Desmond J. Higham

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25

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CMSB
2007
Springer

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Expressive Models for Synaptic Plasticity

14 years 1 months ago

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We explore some presynaptic mechanisms of the calyx of Held synapse through a stochastic model. The model, drawn from a kinetic approach developed in literature, exploits process c...

Andrea Bracciali, Marcello Brunelli, Enrico Catald...

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28

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CMSB
2007
Springer

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A Unifying Framework for Modelling and Analysing Biochemical Pathways Using Petri Nets

14 years 1 months ago

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We give a description of a Petri net-based framework for modelling and analysing biochemical pathways, which uniﬁes the qualitative, stochastic and continuous paradigms. Each per...

David Gilbert, Monika Heiner, Sebastian Lehrack

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36

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CMSB
2007
Springer

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Context Sensitivity in Logical Modeling with Time Delays

14 years 1 months ago

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For modeling and analyzing regulatory networks based on qualitative information and possibly additional temporal constraints, approaches using hybrid automata can be very helpful. ...

Heike Siebert, Alexander Bockmayr

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22

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CMSB
2007
Springer

104views Applied Computing» more CMSB 2007»

On the Analysis of Numerical Data Time Series in Temporal Logic

14 years 1 months ago

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François Fages, Aurélien Rizk

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