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    CMSB
    2007
    Springer
    84views Applied Computing» more  CMSB 2007»
    A Formal and Integrated Framework to Simulate Evolution of Biological Pathways
    14 years 6 months ago
    A Formal and Integrated Framework to Simulate Evolution of Biological Pathways
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    Lorenzo Dematté, Corrado Priami, Alessandro...
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    CMSB
    2007
    Springer
    77views Applied Computing» more  CMSB 2007»
    Efficient, Correct Simulation of Biological Processes in the Stochastic Pi-calculus
    14 years 6 months ago
    Efficient, Correct Simulation of Biological Processes in the Stochastic Pi-calculus
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    This paper presents a simulation algorithm for the stochastic -calculus, designed for the efficient simulation of biological systems with large numbers of molecules. The cost of a ...
    Andrew Phillips, Luca Cardelli
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    CMSB
    2007
    Springer
    97views Applied Computing» more  CMSB 2007»
    Chemical Master Equation and Langevin Regimes for a Gene Transcription Model
    14 years 9 months ago
    Chemical Master Equation and Langevin Regimes for a Gene Transcription Model
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    Raya Khanin, Desmond J. Higham
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    CMSB
    2007
    Springer
    78views Applied Computing» more  CMSB 2007»
    Expressive Models for Synaptic Plasticity
    14 years 9 months ago
    Expressive Models for Synaptic Plasticity
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    We explore some presynaptic mechanisms of the calyx of Held synapse through a stochastic model. The model, drawn from a kinetic approach developed in literature, exploits process c...
    Andrea Bracciali, Marcello Brunelli, Enrico Catald...
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    CMSB
    2007
    Springer
    132views Applied Computing» more  CMSB 2007»
    A Unifying Framework for Modelling and Analysing Biochemical Pathways Using Petri Nets
    14 years 9 months ago
    A Unifying Framework for Modelling and Analysing Biochemical Pathways Using Petri Nets
    Download  www.dcs.gla.ac.uk
    We give a description of a Petri net-based framework for modelling and analysing biochemical pathways, which unifies the qualitative, stochastic and continuous paradigms. Each per...
    David Gilbert, Monika Heiner, Sebastian Lehrack
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    CMSB
    2007
    Springer
    183views Applied Computing» more  CMSB 2007»
    Context Sensitivity in Logical Modeling with Time Delays
    14 years 9 months ago
    Context Sensitivity in Logical Modeling with Time Delays
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    For modeling and analyzing regulatory networks based on qualitative information and possibly additional temporal constraints, approaches using hybrid automata can be very helpful. ...
    Heike Siebert, Alexander Bockmayr
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    CMSB
    2007
    Springer
    104views Applied Computing» more  CMSB 2007»
    On the Analysis of Numerical Data Time Series in Temporal Logic
    14 years 9 months ago
    On the Analysis of Numerical Data Time Series in Temporal Logic
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    François Fages, Aurélien Rizk
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    CMSB
    2007
    Springer
    94views Applied Computing» more  CMSB 2007»
    Simultaneous Stochastic Simulation of Multiple Perturbations in Biological Network Models
    14 years 9 months ago
    Simultaneous Stochastic Simulation of Multiple Perturbations in Biological Network Models
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    Werner Sandmann
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    CMSB
    2007
    Springer
    117views Applied Computing» more  CMSB 2007»
    Decision Diagrams for the Representation and Analysis of Logical Models of Genetic Networks
    14 years 9 months ago
    Decision Diagrams for the Representation and Analysis of Logical Models of Genetic Networks
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    Aurélien Naldi, Denis Thieffry, Claudine Ch...
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    CMSB
    2007
    Springer
    101views Applied Computing» more  CMSB 2007»
    Modelling Yeast Pre-rRNA Processing
    14 years 9 months ago
    Modelling Yeast Pre-rRNA Processing
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    Federica Ciocchetta, Jane Hillston, Martin Kos, Da...
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