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JCSS
2002
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14 years 6 days ago
Efficient algorithms for locating the length-constrained heaviest segments with applications to biomolecular sequence analysis
We study two fundamental problems concerning the search for interesting regions in sequences: (i) given a sequence of real numbers of length n and an upper bound U; find a consecu...
Yaw-Ling Lin, Tao Jiang, Kun-Mao Chao
CORR
2002
Springer
78views Education» more  CORR 2002»
14 years 11 days ago
Linear-Time Algorithms for Computing Maximum-Density Sequence Segments with Bioinformatics Applications
an abstract optimization problem arising from biomolecular sequence analysis. For a sequence A of pairs (ai, wi) for i = 1, . . . , n and wi > 0, a segment A(i, j) is a consecu...
Michael H. Goldwasser, Ming-Yang Kao, Hsueh-I Lu