CPM
2000
Springer
14 years 3 months ago
2000
Springer
CPM
2000
Springer
14 years 3 months ago
2000
Springer
Breakpoint phylogenies methods have been shown to be an effective way to extract phylogenetic information from gene order data. Currently, the only practical breakpoint phylogeny a...
CPM
2000
Springer
14 years 3 months ago
2000
Springer
Abstract. We apply the Boyer–Moore technique to compressed pattern matching for text string described in terms of collage system, which is a formal framework that captures variou...
CPM
2000
Springer
14 years 3 months ago
2000
Springer
CPM
2000
Springer
14 years 3 months ago
2000
Springer
We present a Boyer-Moore approach to string matching over LZ78 and LZW compressed text. The key idea is that, despite that we cannot exactly choose which text characters to inspect...
CPM
2000
Springer
14 years 3 months ago
2000
Springer
We present a new index for approximate string matching. The index collects text q-samples, that is, disjoint text substrings of length q, at fixed intervals and stores their posi...
CPM
2000
Springer
14 years 3 months ago
2000
Springer
The syntenic dista nce between two species is the minimum number of fusions, fissions, and translocations required to transform one genome into the other. The linear syntenic dis...
CPM
2000
Springer
14 years 3 months ago
2000
Springer
Abstract. Ambiguity in dynamic programming arises from two independent sources, the non-uniqueness of optimal solutions and the particular recursion scheme by which the search spac...
CPM
2000
Springer
14 years 3 months ago
2000
Springer
We study Hamming versions of two classical clustering problems. The Hamming radius p-clustering problem (HRC) for a set S of k binary strings, each of length n, is to find p bina...
CPM
2000
Springer
14 years 3 months ago
2000
Springer
Abstract. We present a solution to the problem of performing approximate pattern matching on compressed text. The format we choose is the Ziv-Lempel family, speci cally the LZ78 an...