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CPM
2010
Springer
116views Combinatorics» more  CPM 2010»
14 years 5 months ago
Extended Islands of Tractability for Parsimony Haplotyping
Rudolf Fleischer, Jiong Guo, Rolf Niedermeier, Joh...
CPM
2010
Springer
161views Combinatorics» more  CPM 2010»
14 years 5 months ago
Approximate All-Pairs Suffix/Prefix Overlaps
Niko Välimäki, Susana Ladra, Veli Mä...
CPM
2010
Springer
120views Combinatorics» more  CPM 2010»
14 years 5 months ago
Mod/Resc Parsimony Inference
Abstract. We address in this paper a new computational biology problem that aims at understanding a mechanism that could potentially be used to genetically manipulate natural insec...
Igor Nor, Danny Hermelin, Sylvain Charlat, Jan Eng...
CPM
2010
Springer
180views Combinatorics» more  CPM 2010»
14 years 5 months ago
Algorithms for Three Versions of the Shortest Common Superstring Problem
Abstract. The input to the Shortest Common Superstring (SCS) problem is a set S of k words of total length n. In the classical version the output is an explicit word SCS(S) in whic...
Maxime Crochemore, Marek Cygan, Costas S. Iliopoul...
CPM
2010
Springer
121views Combinatorics» more  CPM 2010»
14 years 5 months ago
Faster Computation of the Robinson-Foulds Distance between Phylogenetic Networks
Tetsuo Asano, Jesper Jansson, Kunihiko Sadakane, R...
CPM
2010
Springer
127views Combinatorics» more  CPM 2010»
14 years 5 months ago
Cover Array String Reconstruction
A proper factor u of a string y is a cover of y if every letter of y is within some occurrence of u in y. The concept generalises the notion of periods of a string. An integer arra...
Maxime Crochemore, Costas S. Iliopoulos, Solon P. ...
CPM
2010
Springer
175views Combinatorics» more  CPM 2010»
14 years 5 months ago
Compression, Indexing, and Retrieval for Massive String Data
The field of compressed data structures seeks to achieve fast search time, but using a compressed representation, ideally requiring less space than that occupied by the original i...
Wing-Kai Hon, Rahul Shah, Jeffrey Scott Vitter
CPM
2010
Springer
126views Combinatorics» more  CPM 2010»
14 years 5 months ago
Optimizing Restriction Site Placement for Synthetic Genomes
Pablo Montes, Heraldo Memelli, Charles B. Ward, Jo...
CPM
2010
Springer
140views Combinatorics» more  CPM 2010»
14 years 5 months ago
Bounds on the Minimum Mosaic of Population Sequences under Recombination
We study the minimum mosaic problem, an optimization problem originated in population genomics. We develop a new lower bound, called the C bound. The C bound is provably higher and...
Yufeng Wu