To design DNA nano-machines or analyze DNA molecular reactions, it is important to be able to predict the energy landscape of molecular structures and the energy barrier of a trans...
We describe a formal language/notation for DNA molecules that may contain nicks and gaps. The elements of the language, DNA expressions, denote formal DNA molecules. Different DNA...
Rudy van Vliet, Hendrik Jan Hoogeboom, Grzegorz Ro...
A very basic problem in all DNA computations is finding a good encoding. Apart from the fact that they must provide a solution, the strands involved should not exhibit any undesir...
Most DNA computing algorithms for mathematical problems start with combinatorial generation of an initial pool. Several methods for initialpool generation have been proposed, inclu...
Ji Youn Lee, Hee-Woong Lim, Suk-In Yoo, Byoung-Tak...
The problem of negative design of DNA languages is addressed, that is, properties and construction methods of large sets of words that prevent undesired bonds when used in DNA com...
Lila Kari, Stavros Konstantinidis, Petr Sosí...
Practically all of life’s molecular processes, from chemical synthesis to replication, involve enzymes that carry out their functions through the catalysis of metastable fuels in...