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DNA
2004
Springer
102views Bioinformatics» more  DNA 2004»
14 years 4 months ago
Minimum Basin Algorithm: An Effective Analysis Technique for DNA Energy Landscapes
To design DNA nano-machines or analyze DNA molecular reactions, it is important to be able to predict the energy landscape of molecular structures and the energy barrier of a trans...
Mitsuhiro Kubota, Masami Hagiya
DNA
2004
Springer
133views Bioinformatics» more  DNA 2004»
14 years 5 months ago
A Clocked DNA-Based Replicator
Bernard Yurke, David Y. Zhang
DNA
2004
Springer
122views Bioinformatics» more  DNA 2004»
14 years 5 months ago
A Design for Cellular Evolutionary Computation by Using Bacteria
Kenichi Wakabayashi, Masayuki Yamamura
DNA
2004
Springer
111views Bioinformatics» more  DNA 2004»
14 years 5 months ago
Combinatorial Aspects of Minimal DNA Expressions
We describe a formal language/notation for DNA molecules that may contain nicks and gaps. The elements of the language, DNA expressions, denote formal DNA molecules. Different DNA...
Rudy van Vliet, Hendrik Jan Hoogeboom, Grzegorz Ro...
DNA
2004
Springer
146views Bioinformatics» more  DNA 2004»
14 years 5 months ago
Partial Words for DNA Coding
A very basic problem in all DNA computations is finding a good encoding. Apart from the fact that they must provide a solution, the strands involved should not exhibit any undesir...
Peter Leupold
DNA
2004
Springer
14 years 5 months ago
Efficient Initial Pool Generation for Weighted Graph Problems Using Parallel Overlap Assembly
Most DNA computing algorithms for mathematical problems start with combinatorial generation of an initial pool. Several methods for initialpool generation have been proposed, inclu...
Ji Youn Lee, Hee-Woong Lim, Suk-In Yoo, Byoung-Tak...
DNA
2004
Springer
157views Bioinformatics» more  DNA 2004»
14 years 5 months ago
Bond-Free Languages: Formalizations, Maximality and Construction Methods
The problem of negative design of DNA languages is addressed, that is, properties and construction methods of large sets of words that prevent undesired bonds when used in DNA com...
Lila Kari, Stavros Konstantinidis, Petr Sosí...
DNA
2004
Springer
114views Bioinformatics» more  DNA 2004»
14 years 5 months ago
Complexity of Self-assembled Shapes
David Soloveichik, Erik Winfree
DNA
2004
Springer
14 years 5 months ago
DNA Hybridization Catalysts and Catalyst Circuits
Practically all of life’s molecular processes, from chemical synthesis to replication, involve enzymes that carry out their functions through the catalysis of metastable fuels in...
Georg Seelig, Bernard Yurke, Erik Winfree