DNA sequence analysis

35

BMCBI
2011

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A Novel And Well-Defined Benchmarking Method For Second Generation Read Mapping

13 years 3 months ago

Background: Second generation sequencing technologies yield DNA sequence data at ultra high-throughput. Common to most biological applications is a mapping of the reads to an almo...

Manuel Holtgrewe, Anne-Katrin Emde, David Weese, K...

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38

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ISMB
1996

124views Computational Biology» more ISMB 1996»

Compact Encoding Strategies for DNA Sequence Similarity Search

14 years 1 months ago

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Determining whether two DNA sequences are similar is an essential component of DNA sequence analysis. Dynamic programming is the algorithm of choice if computational time is not t...

David J. States, Pankaj Agarwal

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40

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ISMB
1998

122views Computational Biology» more ISMB 1998»

Sequence Assembly Validation by Multiple Restriction Digest Fragment Coverage Analysis

14 years 1 months ago

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DNA sequence analysis depends on the accurate assembly of fragment reads for the determination of a consensus sequence. This report examines the possibility of analyzing multiple,...

Eric C. Rouchka, David J. States

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