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    IR
    2008
    89views Natural Language Processing» more  IR 2008»
    Efficient algorithms for pattern matching with general gaps, character classes, and transposition invariance
    13 years 11 months ago
    Efficient algorithms for pattern matching with general gaps, character classes, and transposition invariance
    Download  www.cs.uku.fi
    We develop efficient dynamic programming algorithms for pattern matching with general gaps and character classes. We consider patterns of the form p0g(a0, b0)p1g(a1, b1) . . . pm-1...
    Kimmo Fredriksson, Szymon Grabowski
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    ISCAS
    2005
    IEEE
    129views Hardware» more  ISCAS 2005»
    A reconfigurable architecture for scanning biosequence databases
    14 years 5 months ago
    A reconfigurable architecture for scanning biosequence databases
    Download  www3.ntu.edu.sg
    —Unknown protein sequences are often compared to a set of known sequences (a database scan) to detect functional similarities. Even though efficient dynamic programming algorithm...
    Timothy F. Oliver, Bertil Schmidt, Douglas L. Mask...
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