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DNA
2004
Springer
102views Bioinformatics» more  DNA 2004»
14 years 4 months ago
Minimum Basin Algorithm: An Effective Analysis Technique for DNA Energy Landscapes
To design DNA nano-machines or analyze DNA molecular reactions, it is important to be able to predict the energy landscape of molecular structures and the energy barrier of a trans...
Mitsuhiro Kubota, Masami Hagiya
CSB
2005
IEEE
119views Bioinformatics» more  CSB 2005»
14 years 6 months ago
Temperature and Mutation Switches in the Secondary Structure of Small RNAs
Conformational switching in the secondary structure of RNAs has recently attracted considerable attention, fostered by the discovery of ‘riboswitches’ in living organisms. The...
Assaf Avihoo, Danny Barash
DNA
2009
Springer
185views Bioinformatics» more  DNA 2009»
14 years 7 months ago
NP-Completeness of the Direct Energy Barrier Problem without Pseudoknots
Knowledge of energy barriers between pairs of secondary structures for a given DNA or RNA molecule is useful, both in understanding RNA function in biological settings and in desig...
Ján Manuch, Chris Thachuk, Ladislav Stacho,...