FMSB
2008
14 years 2 months ago
2008
Rule-based modelling is particularly effective for handling the highly combinatorial aspects of cellular signalling. The dynamics is described in terms of interactions between part...
FMSB
2008
14 years 2 months ago
2008
In this work we develop a new technique for over-approximating (in the sense of timed trace inclusion) continuous dynamical systems by timed auThis technique refines commonly-used ...
FMSB
2008
14 years 2 months ago
2008
We introduce bounded asynchrony, a notion of concurrency tailored to the modeling of biological cell-cell interactions. Bounded asynchrony is the result of a scheduler that bounds ...
FMSB
2008
14 years 2 months ago
2008
Abstract. Natural systems, such as organs and organisms, are largescale complex systems with numerous elements and interactions. Modeling such systems can lead to better understand...
FMSB
2008
14 years 2 months ago
2008
Petri nets are a widely used formalism to qualitatively model concurrent systems such as a biological cell. We present techniques for modelling biological processes as Petri nets f...
FMSB
2008
14 years 2 months ago
2008
Abstract. This paper reports on the multi-scale modelling of an intestinal crypt cellular structure coupled with Wnt signalling. Using formal modelling techniques based on the stoc...