In previous work [10], we considered algorithms related to the statistics of matches with words and regular expressions in texts generated by Bernoulli or Markov sources. In this w...
Conventional phylogenetic tree estimation methods assume that all sites in a DNA multiple alignment have the same evolutionary history. This assumption is violated in data sets fro...
We describe an algorithm for the automatic discovery of recurring patterns in protein structures. The patterns consist of individual residues having a defined order along the prote...