GCB
2004
Springer
14 years 4 months ago
2004
Springer
: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs. In this paper, we present a new nonheuristic algorithm, ...
GCB
2004
Springer
14 years 6 months ago
2004
Springer
: We introduce the novel concept of graph alignment, a generalization of graph isomorphism that is motivated by the commonly used multiple sequence alignments. Graph alignments and...
GCB
2004
Springer
14 years 6 months ago
2004
Springer
: Pseudoknots are essential for the functioning of many small RNA molecules. In addition, viral RNAs often exhibit pseudoknots that are required at various stages of the viral life...
GCB
2004
Springer
14 years 6 months ago
2004
Springer
: The main contribution of this paper is a novel approach for fast searching in huge structural databases like the PDB. The data structure is based on an adaption of the generalize...
GCB
2004
Springer
14 years 6 months ago
2004
Springer
Abstract: We report on a model for the interaction of chimeric melanocortin Gprotein coupled receptors with peptide ligands using the rough set approach. Rough sets generate If-The...
GCB
2004
Springer
14 years 6 months ago
2004
Springer
GCB
2004
Springer
14 years 6 months ago
2004
Springer
: The prediction of transcription factor binding sites is an important problem, since it reveals information about the transcriptional regulation of genes. A commonly used represen...
GCB
2004
Springer
14 years 6 months ago
2004
Springer
: The analysis of biological networks involves the evaluation of the vertices within the connection structure of the network. To support this analysis we discuss five centrality m...
GCB
2004
Springer
14 years 6 months ago
2004
Springer
GCB
2004
Springer
14 years 6 months ago
2004
Springer
: Carbon Labeling Systems (CLS) are large equation systems that describe the dynamics of labeled carbon atoms in a metabolic network. The rapid solution of these systems is the alg...