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GCB
2006
Springer
140views Biometrics» more  GCB 2006»
14 years 2 months ago
PALMA: Perfect Alignments using Large Margin Algorithms
: Despite many years of research on how to properly align sequences in the presence of sequencing errors, alternative splicing and micro-exons, the correct alignment of mRNA sequen...
Gunnar Rätsch, Bettina Hepp, Uta Schulze, Che...
GCB
2006
Springer
119views Biometrics» more  GCB 2006»
14 years 2 months ago
Comparative Analysis of Cyclic Sequences: Viroids and other Small Circular RNAs
: The analysis of small circular sequences requires specialized tools. While the differences between linear and circular sequences can be neglected in the case of long molecules su...
Axel Mosig, Ivo L. Hofacker, Peter F. Stadler
GCB
2006
Springer
136views Biometrics» more  GCB 2006»
14 years 2 months ago
Ab Initio Prediction of Molecular Fragments from Tandem Mass Spectrometry Data
: Mass spectrometry is one of the key enabling measurement technologies for systems biology, due to its ability to quantify molecules in small concentrations. Tandem mass spectrome...
Markus Heinonen, Ari Rantanen, Taneli Mielikä...
GCB
2006
Springer
100views Biometrics» more  GCB 2006»
14 years 2 months ago
Comparison of Human Protein-Protein Interaction Maps
Matthias E. Futschik, Gautam Chaurasia, Erich E. W...
GCB
2006
Springer
158views Biometrics» more  GCB 2006»
14 years 2 months ago
Microarray Layout as Quadratic Assignment Problem
Abstract: The production of commercial DNA microarrays is based on a light-directed chemical synthesis driven by a set of masks or micromirror arrays. Because of the natural proper...
Sérgio A. de Carvalho, Sven Rahmann
GCB
2006
Springer
99views Biometrics» more  GCB 2006»
14 years 2 months ago
Shape Distributions and Protein Similarity
: In this paper we describe a similarity model that provides the objective basis for clustering proteins of similar structure. More specifically, we consider the following variant ...
Stefan Canzar, Jan Remy