TCS
2010
13 years 9 months ago
2010
We consider a graph-theoretical formalization of the process of gene assembly in ciliates introduced in Ehrenfeucht et al (2003), where a gene is modeled as a signed graph. The ge...
TCS
2008
13 years 11 months ago
2008
We investigate some differences between the general intramolecular model for gene assembly and its restricted simple model. Although both models satisfactorily sort all current ex...
IJFCS
2007
13 years 11 months ago
2007
The process of gene assembly in ciliates, an ancient group of organisms, is one of the most complex instances of DNA manipulation known in any organism. Three molecular operations...
GG
2004
Springer
14 years 4 months ago
2004
Springer
that graph transformations provide the right level of abstraction, and useful technical tools for studying gene assembly. On the other hand, the gene assembly process inspires a ne...
DNA
2004
Springer
14 years 4 months ago
2004
Springer
The process of gene assembly in ciliates, an ancient group of organisms, is one of the most complex instances of DNA manipulation known in any organisms. This process is fascinatin...
BIRTHDAY
2004
Springer
14 years 4 months ago
2004
Springer
Two models for gene assembly in ciliates have been proposed and investigated in the last few years. The DNA manipulations postulated in the two models are very different: one mode...
DNA
2005
Springer
14 years 4 months ago
2005
Springer
Abstract. The intramolecular model for gene assembly in ciliates considers three operations, ld, hi, and dlad that can assemble any gene pattern through folding and recombination: ...
DNA
2007
Springer
14 years 5 months ago
2007
Springer
Abstract. Gene assembly in ciliates is an impressive computational process. Ciliates have a unique way of storing their genetic information in two fundamentally different forms wi...