Recently, Bloom filters have been widely used in distributed systems where they are replicated to process distributed queries. Bloom filter replicas become stale in a dynamic en...
RNA pseudoknot prediction is an algorithm for RNA sequence search and alignment. An important building block towards pseudoknot prediction is RNA secondary structure prediction. T...
— This paper presents Salsa, a novel, decentralized and asynchronous realization of the “replica exchange” algorithm for simulating the structure, function, folding, and dyna...
Li Zhang, Manish Parashar, Emilio Gallicchio, Rona...
— Molecular Dynamics (MD) is an important atomistic simulation technique, with widespread use in computational chemistry, biology, and materials. An important limitation of MD is...
Modeling the performance behavior of parallel applications to predict the execution times of the applications for larger problem sizes and number of processors has been an active ...
The advent of service-oriented Grid computing has resulted in the need for Grid resources such as clusters to enforce user-specific service needs and expectations. Service Level ...
Publish/subscribe (pub/sub) systems are very suitable for the dissemination of dynamic information over the Internet. As dynamic information is usually characterized by a short li...
Space filling curves (SFCs) are widely used for parallel domain decomposition in scientific computing applications. The proximity preserving properties of SFCs are expected to k...