145
Voted
IPPS
2009
IEEE
15 years 10 months ago
2009
IEEE
Abstract—Widespread emergence of multicore processors will spur development of parallel applications, exposing programmers to degrees of hardware concurrency hitherto unavailable...
126
Voted
IPPS
2009
IEEE
15 years 10 months ago
2009
IEEE
—Using the well-known ATLAS and LAPACK dense linear algebra libraries, we demonstrate that the parallel management overhead (PMO) can grow with problem size on even statically sc...
98
Voted
IPPS
2009
IEEE
15 years 10 months ago
2009
IEEE
145
Voted
IPPS
2009
IEEE
15 years 10 months ago
2009
IEEE
In many scientific applications, significant time is spent tuning codes for a particular highperformance architecture. Tuning approaches range from the relatively nonintrusive (...
80
Voted
IPPS
2009
IEEE
15 years 10 months ago
2009
IEEE
128
Voted
IPPS
2009
IEEE
15 years 10 months ago
2009
IEEE
Computing large multiple protein sequence alignments using progressive alignment tools such as ClustalW requires several hours on state-of-the-art workstations. ClustalW uses a th...
163
Voted
IPPS
2009
IEEE
15 years 10 months ago
2009
IEEE
Through the algorthmic design patterns of data parallelism and task parallelism, the graphics processing unit (GPU) offers the potential to vastly accelerate discovery and innovat...
142
Voted
IPPS
2009
IEEE
15 years 10 months ago
2009
IEEE
HMMer is a widely-used bioinformatics software package that uses profile HMMs (Hidden Markov Models) to model the primary structure consensus of a family of protein or nucleic aci...
127
Voted
IPPS
2009
IEEE
15 years 10 months ago
2009
IEEE
In this paper we describe the parallelization of a dynamic programming algorithm used to find common RNA secondary structures including pseudoknots and similar structures. The se...
87
Voted
IPPS
2009
IEEE
15 years 10 months ago
2009
IEEE
