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    ISMB
    1996
    155views Computational Biology» more  ISMB 1996»
    Gene Recognition in Cyanobacterium Genomic Sequence Data Using the Hidden Markov Model
    14 years 6 days ago
    Gene Recognition in Cyanobacterium Genomic Sequence Data Using the Hidden Markov Model
    Download  www.aaai.org
    We have developed a hidden Markov model (HMM)to detect the protein coding regions within one megabase contiguous sequence data, registered in a database called GenBankin eight ent...
    Tetsushi Yada, Makoto Hirosawa
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    ISMB
    1996
    139views Computational Biology» more  ISMB 1996»
    A Knowledge-Based Method for Protein Structure Refinement and Prediction
    14 years 6 days ago
    A Knowledge-Based Method for Protein Structure Refinement and Prediction
    Download  www.aaai.org
    The native conformation of a protein, in a given environment, is determined entirely by the various interatomic interactions dictated by the amino acid sequence (1-3). We describe...
    Shankar Subramaniam, David K. Tcheng, James M. Fen...
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    ISMB
    1996
    203views Computational Biology» more  ISMB 1996»
    Finding Genes in DNA Using Decision Trees and Dynamic Programming
    14 years 6 days ago
    Finding Genes in DNA Using Decision Trees and Dynamic Programming
    Download  www.aaai.org
    This study demonstratesthe use of decision tree classifiers as the basis for a general gene-finding system. The system uses a dynamic programmingalgorithm that. finds the optimal ...
    Steven Salzberg, Xin Chen, John Henderson, Kenneth...
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    ISMB
    1996
    124views Computational Biology» more  ISMB 1996»
    Compact Encoding Strategies for DNA Sequence Similarity Search
    14 years 6 days ago
    Compact Encoding Strategies for DNA Sequence Similarity Search
    Download  www.stateslab.org
    Determining whether two DNA sequences are similar is an essential component of DNA sequence analysis. Dynamic programming is the algorithm of choice if computational time is not t...
    David J. States, Pankaj Agarwal
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    ISMB
    1996
    144views Computational Biology» more  ISMB 1996»
    Refining Neural Network Predictions for Helical Transmembrane Proteins by Dynamic Programming
    14 years 6 days ago
    Refining Neural Network Predictions for Helical Transmembrane Proteins by Dynamic Programming
    Download  cubic.bioc.columbia.edu
    For transmembrane proteins experimental determina-tion of three-dimensional structure is problematic. However, membrane proteins have important impact for molecular biology in gen...
    Burkhard Rost, Rita Casadio, Piero Fariselli
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    ISMB
    1996
    124views Computational Biology» more  ISMB 1996»
    Characterization of Prokaryotic and Eukaryotic Promoters Using Hidden Markov Models
    14 years 6 days ago
    Characterization of Prokaryotic and Eukaryotic Promoters Using Hidden Markov Models
    Download  linkage.rockefeller.edu
    Anders Gorm Pedersen, Pierre Baldi, Søren B...
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    ISMB
    1996
    149views Computational Biology» more  ISMB 1996»
    Genome-Scale DNA Sequence Recognition by Hybridization to Short Oligomers
    14 years 6 days ago
    Genome-Scale DNA Sequence Recognition by Hybridization to Short Oligomers
    Download  www.aaai.org
    Aleksandar Milosavljevic, Suzana Savkovic, Radomir...
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    ISMB
    1996
    109views Computational Biology» more  ISMB 1996»
    Parameterization Studies for the SAM and HMMER Methods of Hidden Markov Model Generation
    14 years 6 days ago
    Parameterization Studies for the SAM and HMMER Methods of Hidden Markov Model Generation
    Download  www.aaai.org
    Multiple sequence alignment of distantly related viral proteins remains a challenge to all currently available alignment methods. The hidden Markovmodel approach offers a new,flex...
    Marcella A. McClure, Chris Smith, Pete Elton
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    ISMB
    1996
    120views Computational Biology» more  ISMB 1996»
    A Grammar-Based Unification of Several Alignment and Folding Algorithms
    14 years 6 days ago
    A Grammar-Based Unification of Several Alignment and Folding Algorithms
    Download  www.aaai.org
    Weshowin this paper that manypopular models of folding and/or alignment maybe described by a new formalism: multi-tape S-attribute grammars(MTSAG's).This formalism relieves t...
    Fabrice Lefebvre
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    ISMB
    1996
    100views Computational Biology» more  ISMB 1996»
    A Generalized Hidden Markov Model for the Recognition of Human Genes in DNA
    14 years 6 days ago
    A Generalized Hidden Markov Model for the Recognition of Human Genes in DNA
    Download  www.evl.uic.edu
    David Kulp, David Haussler, Martin G. Reese, Frank...
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