Sciweavers

ISMB
1996
13 years 8 months ago
Gene Recognition in Cyanobacterium Genomic Sequence Data Using the Hidden Markov Model
We have developed a hidden Markov model (HMM)to detect the protein coding regions within one megabase contiguous sequence data, registered in a database called GenBankin eight ent...
Tetsushi Yada, Makoto Hirosawa
ISMB
1996
13 years 8 months ago
A Knowledge-Based Method for Protein Structure Refinement and Prediction
The native conformation of a protein, in a given environment, is determined entirely by the various interatomic interactions dictated by the amino acid sequence (1-3). We describe...
Shankar Subramaniam, David K. Tcheng, James M. Fen...
ISMB
1996
13 years 8 months ago
Finding Genes in DNA Using Decision Trees and Dynamic Programming
This study demonstratesthe use of decision tree classifiers as the basis for a general gene-finding system. The system uses a dynamic programmingalgorithm that. finds the optimal ...
Steven Salzberg, Xin Chen, John Henderson, Kenneth...
ISMB
1996
13 years 8 months ago
Compact Encoding Strategies for DNA Sequence Similarity Search
Determining whether two DNA sequences are similar is an essential component of DNA sequence analysis. Dynamic programming is the algorithm of choice if computational time is not t...
David J. States, Pankaj Agarwal
ISMB
1996
13 years 8 months ago
Refining Neural Network Predictions for Helical Transmembrane Proteins by Dynamic Programming
For transmembrane proteins experimental determina-tion of three-dimensional structure is problematic. However, membrane proteins have important impact for molecular biology in gen...
Burkhard Rost, Rita Casadio, Piero Fariselli
ISMB
1996
13 years 8 months ago
Genome-Scale DNA Sequence Recognition by Hybridization to Short Oligomers
Aleksandar Milosavljevic, Suzana Savkovic, Radomir...
ISMB
1996
13 years 8 months ago
Parameterization Studies for the SAM and HMMER Methods of Hidden Markov Model Generation
Multiple sequence alignment of distantly related viral proteins remains a challenge to all currently available alignment methods. The hidden Markovmodel approach offers a new,flex...
Marcella A. McClure, Chris Smith, Pete Elton
ISMB
1996
13 years 8 months ago
A Grammar-Based Unification of Several Alignment and Folding Algorithms
Weshowin this paper that manypopular models of folding and/or alignment maybe described by a new formalism: multi-tape S-attribute grammars(MTSAG's).This formalism relieves t...
Fabrice Lefebvre
ISMB
1996
13 years 8 months ago
A Generalized Hidden Markov Model for the Recognition of Human Genes in DNA
David Kulp, David Haussler, Martin G. Reese, Frank...