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JBI
2006
13 years 10 months ago
Strategies for referent tracking in electronic health records
The goal of referent tracking is to create an ever-growing pool of data relating to the entities existing in concrete spatiotemporal reality. In the context of Electronic Healthca...
Werner Ceusters, Barry Smith
JBI
2006
13 years 10 months ago
Phylogenetics by likelihood: Evolutionary modeling as a tool for understanding the genome
Molecular evolutionary studies provide a means of investigating how cells function and how organisms adapt to their environment. The products of evolutionary studies provide medic...
Carolin Kosiol, Lee Bofkin, Simon Whelan
JBI
2006
117views Bioinformatics» more  JBI 2006»
13 years 10 months ago
Desiderata for domain reference ontologies in biomedicine
Domain reference ontologies represent knowledge about a particular part of the world in a way that is independent from specific objectives, through a theory of the domain. An exam...
Anita Burgun
JBI
2006
13 years 10 months ago
Methods in biomedical ontology
Research on ontologies is becoming widespread in the biomedical informatics community. At the same time, it has become apparent that the challenges of properly constructing and ma...
Alexander C. Yu
JBI
2006
13 years 10 months ago
Bioinformatics and biological reality
Many bioinformaticians seem to shy away from believing that we can have knowledge about a mind-independent biological reality. This paper attempts to show that this tendency is ne...
Ingvar Johansson
JBI
2008
159views Bioinformatics» more  JBI 2008»
13 years 10 months ago
SEGS: Search for enriched gene sets in microarray data
Gene Ontology (GO) terms are often used to interpret the results of microarray experiments. The most common approach is to perform Fisher's exact tests to find gene sets anno...
Igor Trajkovski, Nada Lavrac, Jakub Tolar
JBI
2008
104views Bioinformatics» more  JBI 2008»
13 years 10 months ago
Ontology-enhanced automatic chief complaint classification for syndromic surveillance
Emergency department free-text chief complaints (CCs) are a major data source for syndromic surveillance. CCs need to be classified into syndromic categories for subsequent automa...
Hsin-Min Lu, Daniel Zeng, Lea Trujillo, Ken Komats...